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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGCACGCCACTTCATATGGCTGCCCGTGGTGGTTCTTTGGACTGTGTCCGGATGTTGCTTGCTTGGGGAGCAGATAGACTTCAATTAGATTCTTCTGGgtaagaaaatgtcatttacagtttcaagatccattgctgtcagtgtagatcactaaggaaaagacttgaaggttcagtcatcaattatcagtataaagat...

Basic information

species Glycine max
transcript GLYMA08G47310.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19348105|gb|BM892637.1|BM892637
EST:     CGGATGTTGCTTGCTTGGGGAGCAGATAGACTTCAATTAGATTCTTCTGG                         GAAAATACCATTCTCAGTTGCCCTGAAGCACAAGCATAAGGCATGTGCTGC
genomic: CGGATGTTGCTTGCTTGGGGAGCAGATAGACTTCAATTAGATTCTTCTGGgtaagaaaat ... ttcttttcagGAAAATACCATTCTCAGTTGCCCTGAAGCACAAGCATAAGGCATGTGCTGC
EST: gi|7925927|gb|AW831953.1|AW831953
EST:     CGGATGTTGCTTGCTTGGGGAGCAGATAGACTTCAATTAGATTCTTCTGG                         GAAAATACCATTCTCAGTTGCCCTGAAGCACAAGCATAAGGCATGTGCTGC
genomic: CGGATGTTGCTTGCTTGGGGAGCAGATAGACTTCAATTAGATTCTTCTGGgtaagaaaat ... ttcttttcagGAAAATACCATTCTCAGTTGCCCTGAAGCACAAGCATAAGGCATGTGCTGC
EST: gi|208339962|gb|GE134026.1|GE134026
EST:     CGGATGTTGCTTGCTTGGGGAGCAGATAGACTTCAATTAGATTCTTCTGG                         GAAAATACCATTCTCAGTTGCCCTGAAGCACAAGCATAAGGCATGTGCTGC
genomic: CGGATGTTGCTTGCTTGGGGAGCAGATAGACTTCAATTAGATTCTTCTGGgtaagaaaat ... ttcttttcagGAAAATACCATTCTCAGTTGCCCTGAAGCACAAGCATAAGGCATGTGCTGC
EST: gi|19348550|gb|BM893082.1|BM893082
EST:     CGGATGTTGCTTGCTTGGGGAGCAGATAGACTTCAATTAGATTCTTCTGG                         GAAAATACCATTCTCAGTTGCCCTGAAGCACAAGCATAAGGCATGTGCTGC
genomic: CGGATGTTGCTTGCTTGGGGAGCAGATAGACTTCAATTAGATTCTTCTGGgtaagaaaat ... ttcttttcagGAAAATACCATTCTCAGTTGCCCTGAAGCACAAGCATAAGGCATGTGCTGC
EST: gi|18729987|gb|BM525615.1|BM525615
EST:     CGGATGTTGCTTGCTTGGGGAGCAGATAGACTTCAATTAGATTCTTCTGG                         GAAAATACCATTCTCAGTTGCCCTGAAGCACAAGCATAAGGCATGTGCTGC
genomic: CGGATGTTGCTTGCTTGGGGAGCAGATAGACTTCAATTAGATTCTTCTGGgtaagaaaat ... ttcttttcagGAAAATACCATTCTCAGTTGCCCTGAAGCACAAGCATAAGGCATGTGCTGC
EST: gi|13562544|gb|BG550764.1|BG550764
EST:     CGGATGTTGCTTGCTTGGGGAGCAGATAGACTTCAATTAGATTCTTCTGG                         GAAAATACCATTCTCAGTTGCCCTGAAGCACAAGCATAAGGCATGTGCTGC
genomic: CGGATGTTGCTTGCTTGGGGAGCAGATAGACTTCAATTAGATTCTTCTGGgtaagaaaat ... ttcttttcagGAAAATACCATTCTCAGTTGCCCTGAAGCACAAGCATAAGGCATGTGCTGC
EST: gi|5057950|gb|AI736426.1|AI736426
EST:     CGGATGTTGCTTGCTTGGGGAGCAGATAGACTTCAATTAGATTCTTCTGG                         GAAAATACCATTCTCAGTTGCCCTGAAGCACAAGCATAAGGCATGTGCTGC
genomic: CGGATGTTGCTTGCTTGGGGAGCAGATAGACTTCAATTAGATTCTTCTGGgtaagaaaat ... ttcttttcagGAAAATACCATTCTCAGTTGCCCTGAAGCACAAGCATAAGGCATGTGCTGC
EST: gi|19053076|gb|BM731743.1|BM731743
EST:     CGGATGTTGCTTGCTTGGGGAGCAGATAGACTTCAATTAGATTCTTCTGG                         GAAAATACCATTCTCAGTTGCCCTGAAGCACAAGCATAAGGCATGTGCTGC
genomic: CGGATGTTGCTTGCTTGGGGAGCAGATAGACTTCAATTAGATTCTTCTGGgtaagaaaat ... ttcttttcagGAAAATACCATTCTCAGTTGCCCTGAAGCACAAGCATAAGGCATGTGCTGC
EST: gi|5607045|gb|AI901143.1|AI901143
EST:     CGGATGTTGCTTGCTTGGGGAGCAGATAGACTTCAATTAGATTCTTCTGG                         GAAAATACCATTCTCAGTTGCCCTGAAGCACAAGCATAAGGCATGTGCTGC
genomic: CGGATGTTGCTTGCTTGGGGAGCAGATAGACTTCAATTAGATTCTTCTGGgtaagaaaat ... ttcttttcagGAAAATACCATTCTCAGTTGCCCTGAAGCACAAGCATAAGGCATGTGCTGC
EST: gi|120495669|gb|EH223836.1|EH223836
EST:     TTGCTTGCTTGGGGAGCAGATAGACTTCAATTAGATTCTTCTGG                         GAAAATACCATTCTCAGTTGCCCTGAAGCACAAGCATAAGGCATGTGCTGC
genomic: TTGCTTGCTTGGGGAGCAGATAGACTTCAATTAGATTCTTCTGGgtaagaaaat ... ttcttttcagGAAAATACCATTCTCAGTTGCCCTGAAGCACAAGCATAAGGCATGTGCTGC
EST: gi|193447840|gb|FK410969.1|FK410969
EST:     CGGATGTTGCTTGCTTGGGGAGCAGATAGACTTCAATTAGATTCTTCTGG                         GAAAATACCATTCTCAGTTGCCCTGAAGCACAAGCATAAGGCATGTGCTGC
genomic: CGGATGTTGCTTGCTTGGGGAGCAGATAGACTTCAATTAGATTCTTCTGGgtaagaaaat ... ttcttttcagGAAAATACCATTCTCAGTTGCCCTGAAGCACAAGCATAAGGCATGTGCTGC
EST: gi|151399451|gb|EV269322.1|EV269322
EST:     CGGATGTTGCTTGCTTGGGGAGCAGATAGACTTCAATTAGATTCTTCTGG                         GAAAATACCATTCTCAGTTGCCCTGAAGCACAAGCATAAGGCATGTGCTGC
genomic: CGGATGTTGCTTGCTTGGGGAGCAGATAGACTTCAATTAGATTCTTCTGGgtaagaaaat ... ttcttttcagGAAAATACCATTCTCAGTTGCCCTGAAGCACAAGCATAAGGCATGTGCTGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAAGCACGCCACTTCATATGGCTGCCCGTGGTGGTTCTTTGGACTGTGTCCGGATGTTGCTTGCTTGGGGAGCAGATAGACTTCAATTAGATTCTTCTGGgtaagaaaatgtcatttacagtttcaagatccattgctgtcagtgtagatcactaaggaaaagacttgaaggttcagtcatcaattatcagtataaagat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaaaaga