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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCCACGCTTGGTAGCTCCAACATGCTTGTACCTGGCATCAAAAGCAGAAGAAAGCACAGTGCAGGCTCGGCTTCTTGTATTTTACATTAAAAAATTATgtaagctgttagcttataattttttcttaatttgcttcgtgttgacttttgatcttaaaagtgaataatttgtttccaaatttgtctcatgctattatatttcattatttcctttctatgctgaaagcacagtgattttgaatgcag

Basic information

species Glycine max
transcript GLYMA08G46170.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G46170.2 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os09g32680.4 (Oryza sativa), 5'ss of exon 4
GATCCACGCTTGGTAGCTCCAACATGCTTGTACCTGGCATCAAAAGCAGAAGAAAGCACAGTGCAGGCTCGGCTTCTTGTATTTTACATTAAAAAATTATgtaagctgttagcttataattttttcttaatttgcttcgtgttgacttttgatcttaaaagtg-aataatttgtttccaaatttgtctcatgctattatatttcattatttcctttctatgctgaaagcacagtgattttgaatgcag
   || ||  ||||||| ||||| || |||||  |||||||||| |  ||||| ||||||||||| ||  | |||||||| |||||||| |||||  | |||     |   ||| |||||     | ||| | |   | | || | |   ||    | || || | |||  |    | |||  |||    | |      |     |                                          
---CCTCGTCTGGTAGCACCAACCTGTTTGTATTTGGCATCAAAGGTGGAAGAGAGCACAGTGCAAGCAAGACTTCTTGTCTTTTACATAAAAAAGATGTGTGgtaag---gctcataat-----cataaatggacacatattta-tcggga----agaactgcactaacctaaaactaaacatgtgctctccccccgcaaaatgtag----------------------------------------

upper sequence: GLYMA08G46170.2 (Glycine max), 5'ss of exon 6
lower sequence: AT5G48640.1 (Arabidopsis thaliana), 5'ss of exon 5
GATCCACGCTTGGTAGCTCCAACATGCTTGTACCTGGCATCAAAAGCAGAAGAAAGCACAGTGCAGGCTCGGCTTCTTGTATTTTACATTAAAAAATTATgtaagctgttagcttataattttttcttaatttgcttcgtgttgacttttgatcttaaaagtgaataatttgtttccaaatttgtctcat--gctattatatttcattatttcctttctatgctgaaagcacagtgattttgaatgcag
|| || ||  | || ||||  || ||||||||||||||||| ||||| |||||||||| |||||||||  ||  |||||| |||||||| |||| ||| |||||  | ||    |    ||||||  |  ||    || ||        |   ||| ||  ||  |  ||| ||  || ||      ||   | | |||||| |    |                                        
GAGCCTCGACTTGTTGCTCTTACGTGCTTGTACCTGGCATCTAAAGCTGAAGAAAGCATAGTGCAGGCCAGGAATCTTGTTTTTTACATCAAAAGATTGTgtaatatcttcttcttctgtttttttatttttcaaatcatgagagtacctccccttcaatatgctt--ttttttgacatatcgacgacaacggttcttatatctttgcag---------------------------------------

upper sequence: GLYMA08G46170.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv00s0360g00050.t01 (Vitis vinifera), 5'ss of exon 5
GATCCACGCTTGGTAGCTCCAACATGCTTGTACCTGGCATCAAAAGCAGAAGAAAGCACAGTGCAGGCTCGGCTTCTTGTATTTTACATTAAAAAATTATgtaagctgttagcttataattttttcttaatttgcttcgtgttgacttttgatcttaaaagtgaataatttgtttccaaatttgtctcatgctattatatttcattatttcctttctatgctgaaagcacagtgattttgaatgcag
||||||||  | || ||||||||  |||||||| ||||  ||||||||||||||||||| ||||||||| | ||||||||||||||| | | ||||||| |||| |  ||       |   |  | || |  |||   || ||   | |  |   |    ||  | | ||| |||  ||    ||   |    | |   |  || | || |||||  |                             
GATCCACGTCTTGTGGCTCCAACTAGCTTGTACTTGGCTGCAAAAGCAGAAGAAAGCACTGTGCAGGCTAGACTTCTTGTATTTTACGTCAGAAAATTAAgtaatcacttgttactcagcatgatgttgaactgcg--gttttagttctccagtcttgtggttgacattttattt--aa---cgtaagaactgagtgcctgacact-ttccctttgcag----------------------------

upper sequence: GLYMA08G46170.2 (Glycine max), 5'ss of exon 6
lower sequence: PP1S18_263V6.1 (Physcomitrella patens), 5'ss of exon 3
GATCCACGCTTGGTAGCTCCAACATGCTTGTACCTGGCATCAAAAGCAGAAGAAAGCACAGTGCAGGCTCGGCTTCTTGTATTTTACATTAAAAAATTATgtaagctgttagcttataattttttcttaatttgcttcgtgttgacttttgat-cttaaaagtgaataatttgtttccaaatttgtctcatgctattatattt-cattatttcctttctatgctgaaagcacagtgattttgaatgcag
                            |||||||||| || |||||||||||||||||||||||||||  | ||||||| || |||   || ||| |  |       ||  |||||   | |    |  |  || |     |  |      | | | | ||| ||  ||  || |  |  ||| |||  | | |     |   ||| |    | | |||  | ||                       
---------------------------CTGTACCTGGCCTCCAAAGCAGAAGAAAGCACAGTGCAGGCTAAGATTCTTGTTTTCTACTCAAAGAAAATCCGAGGAACCTTCTCTTAT--CTCTACACTTgtaagcctgaaactctcagccactgcgttacagtaaacgatgggtatttatttttctctgttacaaagtggtgaacatgagaagcatcctacacagattt--------------------

upper sequence: GLYMA08G46170.2 (Glycine max), 5'ss of exon 6
lower sequence: PP1S427_18V6.1 (Physcomitrella patens), 5'ss of exon 5
GATCCACGCTTGGTAGCTCCAACATGCTTGTACCTGGCATCAAAAGCAGAAGAAAGCACAGTGCAGGCTCGGCTTCTTGTATTTTACATTAAAAAATTATgtaagctgttagcttataatttt--ttcttaatttg---cttcgtgttgacttttgatcttaaaagtgaataattt-gtttccaaatttgtctcatgctattatatttcattatttcctttctatgctgaaagcacagtgattttgaatgcag
                            |||| ||||| || |||||||||||||| ||||||||||||  ||||||||| || | ||  || ||| |  |       || || | |   |||  || | | | ||   ||    | |    |  |||  ||| ||    | || | | ||    |  |             |||||  |    | ||  ||||                             
---------------------------CTGTATCTGGCCTCCAAAGCAGAAGAAAGTACAGTGCAGGCTAAGCTTCTTGTTTTCTGCACGAAGAAAATTCGGGCAACCTTCGCCTGTCTCTTTACTTgtaagtatgaaactctccgctactgtacgataataagaggtggtgatctcgctttgctacatagaggtcagagggatattgtaaagctaccaatctacat--------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|105633058|gb|DW246615.1|DW246615
EST:     AGAAAGCACAGTGCAGGCTCGGCTTCTTGTATTTTACATTAAAAAATTAT                         ACACTGATGACAAGTATAGATATGAAATCAAGGACATACTTGAAATGGAAA
genomic: AGAAAGCACAGTGCAGGCTCGGCTTCTTGTATTTTACATTAAAAAATTATgtaagctgtt ... ttgaatgcagACAGTGATGACAAGTATAGATATGAAATCAAGGACATACTTGAAATGGAAA
EST: gi|192305231|gb|FG993969.1|FG993969
EST:     AGAAAGCACAGTGCAGGCTCGGCTTCTTGTATTTTACATTAAAAAATTAT                         ACAGTGATGACAAGTATAGATATGAAATCAAGGACATACTTGAAATGGAAA
genomic: AGAAAGCACAGTGCAGGCTCGGCTTCTTGTATTTTACATTAAAAAATTATgtaagctgtt ... ttgaatgcagACAGTGATGACAAGTATAGATATGAAATCAAGGACATACTTGAAATGGAAA