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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTGCACTTCAAATGGCCGCTGAAGCTAGGAATCCATATTTTAGGTTGGGTTACAACAGCTTGGGTGCATTTGCAACCATTAACCATCTCCACTTTCAGgtacgcattaccaatcaactcgagatcactgcaatgcaatattctttatgttgattattggcttgttagaatccttatctagtgttctagcagtattcaaattgacattttttgattttgacgaactcag

Basic information

species Glycine max
transcript GLYMA08G43200.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G43200.1 (Glycine max), 5'ss of exon 6
lower sequence: AT4G26850.1 (Arabidopsis thaliana), 5'ss of exon 5
GCTTGCACTTCAAATGGCCGCTGAAGCTAGGAATCCATATTTTAGGTTGGGTTACAACAGCTTGGGTGCATTTGCAACCATTAACCATCTCCACTTTCAGgtacg--cattaccaatcaactcgagatcactgcaatgcaatattctttatgttgattattg-gcttgttagaatccttatctagtgttctagcagtattcaaattgacattttttgattttgacgaactcag
||||||| |||| ||||| ||||| |||   |||||||| || ||  | |||||||||||||||||||| ||||| || || || ||||||||||||||||||    ||  |   ||| |  |   | |  | ||        |  | || | || || ||  | |||||    |  | ||    | |   | |||                                     
GCTTGCAGTTCACATGGCTGCTGAGGCTGCTAATCCATACTTCAGACTCGGTTACAACAGCTTGGGTGCTTTTGCCACTATCAATCATCTCCACTTTCAGgtatatccaaaagtgatccaagcataaccttttcacccttgc-tcatctaagatgtttgttctgattgttttggtggtgattgtttttggaaacag-------------------------------------

upper sequence: GLYMA08G43200.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv19s0090g01000.t01 (Vitis vinifera), 5'ss of exon 5
GCTTGCACTTCAAATGGCCGCTGAAGCTAGGAATCCATATTTTAGGTTGGGTTACAACAGCTTGGGTGCATTTGCAACCATTAACCATCTCCACTTTCAGgta------cgcattaccaatcaactcgagatcactgcaatgcaatattctttatgttgattattggcttgttagaatccttatctagtgttctagcagtattcaaattgacattttttgattttgacgaactcag
|||||| ||| | ||||| |  |||||  | |||||||||||  ||||||||||||||||||||||||||||||| ||||| ||||| || |||||||||||       | | | |||  | |||| |  |||| || | |  || |||   |   ||| ||| ||   | | | | ||| || ||    |  || |||                                     
GCTTGCCCTTGACATGGCTGTGGAAGCAGGAAATCCATATTTCCGGTTGGGTTACAACAGCTTGGGTGCATTTGCTACCATCAACCACCTTCACTTTCAGgtttctttccacctcacctttgaact-gcaatcattgtactataaaattggctccattggttaatgaaatatga-attccataactttcatggtaacag-------------------------------------

upper sequence: GLYMA08G43200.1 (Glycine max), 5'ss of exon 6
lower sequence: PP1S9_179V6.1 (Physcomitrella patens), 5'ss of exon 5
GCTTGCACTTCAAATGGCCGCTGAAGCTAGGAATCCATATTTTAGGTTGGGTTACAACAGCTTGGGTGCATTTGCAACCATTAACCATCTCCACTTTCAGgta---cgcattaccaatcaactcgagatcactgcaatgcaatattctttatgttgattattggcttgttagaatccttatctagtgttctagcagtattcaaattgacattttttgattttgacgaactcag
 || ||  | || ||||| ||||| || |  ||||| |||||  |  | |||||||||||||||||||||||||| || || |||||  | || || ||||||     |||  |||   | |  |  |   ||||  | |  |     | | | | ||||    | |||   |||     || |       |      || | |                             
ACTGGCTTTGCACATGGCTGCTGAGGCAAACAATCCGTATTTCCGCCTAGGTTACAACAGCTTGGGTGCATTTGCCACAATCAACCACTTGCATTTCCAGgtagagtacatgcccatgtagcaggttaagtctgctgt-ctctgacgctcaagctaatta----cgtgtagcaattgcgttcaaagaagtcaatgccgttgagag----------------------------

upper sequence: GLYMA08G43200.1 (Glycine max), 5'ss of exon 6
lower sequence: EFJ19729 (Selaginella moellendorffii), 5'ss of exon 5
GCTTGCACTTCAAATGGCCGCTGAAGCTAGGAATCCATATTTTAGGTTGGGTTACAACAGCTTGGGTGCATTTGCAACCATTAACCATCTCCACTTTCAGgtacgc--attaccaatcaactcgagatcactgcaatgcaatattctttatgttgattattggcttgttagaatccttatctagtgttctagcagtattcaaattgacattttttgattttgacgaactcag
  | || |||||||||||     |||| |  |||  ||| || ||  | || |  || || ||||| |||||||| || |||||||||||||| ||||||||| |   |  |  |||    |     | | |||  || ||  |  ||| |  |||| || |                                                                      
TATAGCTCTTCAAATGGCTAAACAAGCAAATAATATATACTTCAGACTTGGATTTAATAGTTTGGGAGCATTTGCTACAATTAACCATCTCCATTTTCAGgtatgtgaaagaataatatttttatatttattgc--tgtaagctaattttttctgataatag----------------------------------------------------------------------

upper sequence: GLYMA08G43200.1 (Glycine max), 5'ss of exon 6
lower sequence: EFJ22189 (Selaginella moellendorffii), 5'ss of exon 5
GCTTGCACTTCAAATGGCCGCTGAAGCTAGGAATCCATATTTTAGGTTGGGTTACAACAGCTTGGGTGCATTTGCAACCATTAACCATCTCCACTTTCAGgtacgcattaccaatcaactcgagatcactgcaatgcaatattctttatgttgattattggcttgttagaatccttatctagtgttctagcagtattcaaattgacattttttgattttgacgaactcag
  | ||| || | ||||| || ||||| || | |||||  ||| | ||||| || || || ||||||||||||||||| || || |||||||| |||||||||   ||||  |   |  |    || | || |     || | |||||| || ||                                                                           
TTTGGCAATTTATATGGCAGCAGAAGCAAGCAGTCCATTCTTTCGCTTGGGCTATAATAGTTTGGGTGCATTTGCAACAATAAATCATCTCCATTTTCAGgta-atattatta--tatttt---ataattgtatatttatttactttatttttatag-------------------------------------------------------------------------

upper sequence: GLYMA08G43200.1 (Glycine max), 5'ss of exon 6
lower sequence: EFJ25760 (Selaginella moellendorffii), 5'ss of exon 5
GCTTGCACTTCAAATGGCCGCTGAAGCTAGGAATCCATATTTTAGGTTGGGTTACAACAGCTTGGGTGCATTTGCAACCATTAACCATCTCCACTTTCAGgtacgcattaccaatcaactcgagatcactgcaatgcaatattctttatgttgattattggcttgttagaatccttatctagtgttctagcagtattcaaattgacattttttgattttgacgaactcag
  | ||| || | ||||| || ||||| || | |||||  ||| | ||||| || || || ||||||||||||||||| || || |||||||| |||||||||   ||||  |         |  | |     ||  | | |  |||||                                                                                 
TTTGGCAATTTATATGGCAGCAGAAGCAAGCAGTCCATTCTTTCGCTTGGGCTATAATAGTTTGGGTGCATTTGCAACAATAAATCATCTCCATTTTCAGgta-atattattatattttataattttatatttatctattttattttatag-------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13312872|gb|BG406523.1|BG406523
EST:     GTTACAACAGCTTGGGTGCATTTGCAACCATTAACCATCTCCACTTTCAG                         GCATATTACTTGGCTCTGCCTTTTCCAATTGAGAAGGCCCCTACTAAGAAA
genomic: GTTACAACAGCTTGGGTGCATTTGCAACCATTAACCATCTCCACTTTCAGgtacgcatta ... acgaactcagGCATATTACTTGGCTCTGCCTTTTCCAATTGAGAAGGCCCCTACTAAGAAA