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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGATGTCTTTTTAATTTGCTCAAATGCAATGCAATACAATGCACCAGAGACTATATACCACAAACAGgtataaagctcaatgcttccctgcattccctttccctcccaataaatgtgacatcaataattgtttttattgtgcttactgtgtgacccctatatttgtcacag

Basic information

species Glycine max
transcript GLYMA08G43050.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G43050.1 (Glycine max), 5'ss of exon 6
lower sequence: AT5G55040.2 (Arabidopsis thaliana), 5'ss of exon 6
ACTGATGTCTTTTTAATTTGCTCAAATGCAATGCAATACAATGCACCAGAGACTATATACCACAAACAGgta---taaagctcaatgcttccctgcattccctttccctcccaataaatgtgacatcaataattgtttttattgtgcttactgtgtgacccctatatttgtcacag-
|  |||||||| || ||||||||||||||||||||||||||| |  |||| ||| | ||| | |||||||||    |    |  ||  |  |    |||  |||||  | | ||| |  ||        | | | || |   ||    || | |     || | | |||   |    
AGCGATGTCTTATTGATTTGCTCAAATGCAATGCAATACAATTCCTCAGACACTGTCTACTATAAACAGgtaaatcatgtttttatattctcaccaattttctttctttgctaattagggt--------ttacttttctgtctgccggtattttaaactccttttttttcctattag

upper sequence: GLYMA08G43050.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv19s0090g00610.t01 (Vitis vinifera), 5'ss of exon 6
ACTGATGTCTTTTTAATTTGCTCAAATGCAATGCAATACAATGCACCAGAGACTATATACCACAAACAGgtataaagctcaatgcttccctgcatt---ccctttccctcccaataaatgtgacatcaataattgtttttattgtgcttactgtgtgacccctatatttgtcacag
| ||| || ||| | |||||| | |||||||||||||||||||| ||||| || |||||||| ||||||||| || |||    ||  |  |   ||   |   |||  |  |  |   | ||    |       || |||| |||  |||||         ||||| | |  |   
AGTGACGTTTTTCTGATTTGCACCAATGCAATGCAATACAATGCCCCAGATACCATATACCATAAACAGgtacaaggcttttggcccctttattttaatcatcttcaattgcttttgttttgcgggcttagtcggtatttaatgttattactaaa------ctataatggaaag--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193339504|gb|FK304823.1|FK304823
EST:     GCTCAAATGCAATGCAATACAATGCACCAGAGACTATATACCACAAACAG                         GCACGATCAATACAAGAACTTGGACGGAAGAAGTTTGAGAAGTTAAGGATT
genomic: GCTCAAATGCAATGCAATACAATGCACCAGAGACTATATACCACAAACAGgtataaagct ... tttgtcacagGCACGATCAATACAAGAACTTGGACGGAAGAAGTTTGAGAAGTTAAGGATT