1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CTTTGAGCGTTTTCGTGGAATTCTTCATGAAGGAGAAATTGACAAACGTGTTCAGTTTCTGATTGAAGGTTTATTTGCAATAAGAAAAGCAAAGTTTCAGgtacttcttttttattgtttgcgataccacatttacaaataacacaaaattcaatgcttttgttaatcaatttaaaggaatagtttgaaattgaaatgtattatgatggttacattgcatttgcag
species | Glycine max |
transcript | GLYMA08G41440.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AGTTTCTTGTATTTGAAGGTTTATTTGCAATAAGAAAAGCAAAGTTTCAG GGCTATCCAGCTGTTCGTCCTGAACTAGATCTTGTGGAACAGGAAGATCAGEST: gi|208093601|gb|GD893620.1|GD893620
genomic: AGTTTC-TG-A-TTGAAGGTTTATTTGCAATAAGAAAAGCAAAGTTTCAGgtacttcttt ... gcatttgcagGGCTATCCAGCTGTTCGTCCTGAACTAGATCTTGTGGAACAGGAAGATCAG
EST: TTCAGTTTCTGATTGAAGGTTTATTTGCAATAAGAAAAGCAAAGTTTCAG GGCTATCCAGCTGTTCGTCCTGAACTAGATCTTGTGGAACAGGAAGATCAGEST: gi|193384330|gb|FK351792.1|FK351792
genomic: TTCAGTTTCTGATTGAAGGTTTATTTGCAATAAGAAAAGCAAAGTTTCAGgtacttcttt ... gcatttgcagGGCTATCCAGCTGTTCGTCCTGAACTAGATCTTGTGGAACAGGAAGATCAG
EST: CAATAAG-AAAGCTAAAGTTTCAG GGCTATCCAGCTGTTCGTCCTGAACTAGATCTTGTGGAACAGGAAGATCAGEST: gi|193350487|gb|FK317491.1|FK317491
genomic: CAATAAGAAAAGC-AAAGTTTCAGgtacttcttt ... gcatttgcagGGCTATCCAGCTGTTCGTCCTGAACTAGATCTTGTGGAACAGGAAGATCAG
EST: CAGTTTCTGATTTGTAAGGTTTATTTGCAATAAGAAAAGCAAAGTTTCAG GGCTATCCAGCTGTTCGTCCTGAACTAGATCTTGTGGAACAGGAAGATCAGEST: gi|193331807|gb|FK296291.1|FK296291
genomic: CAGTTTCTGA-TTG-AAGGTTTATTTGCAATAAGAAAAGCAAAGTTTCAGgtacttcttt ... gcatttgcagGGCTATCCAGCTGTTCGTCCTGAACTAGATCTTGTGGAACAGGAAGATCAG
EST: CAGTTTCTGATTTGAAGGTTTATTTGCAATAAGAAAAGCAAAGTTTCAG GGCTATCCAGCTGTTCGTCCTGAACTAGATCTTGTGGAACAGGAAGATCAAEST: gi|193627644|gb|FK576314.1|FK576314
genomic: CAGTTTCTGA-TTGAAGGTTTATTTGCAATAAGAAAAGCAAAGTTTCAGgtacttcttt ... gcatttgcagGGCTATCCAGCTGTTCGTCCTGAACTAGATCTTGTGGAACAGGAAGATC-A
EST: TTTCTGATTGAAGGTTTATTTGCAATAAGAAAAGCAAAGTTTCAG GGCTATCCAGCTGTTCGTCCTGAACTAGATCTTGTGGAACAGGAAGATCAGEST: gi|193422593|gb|FK390192.1|FK390192
genomic: TTTCTGATTGAAGGTTTATTTGCAATAAGAAAAGCAAAGTTTCAGgtacttcttt ... gcatttgcagGGCTATCCAGCTGTTCGTCCTGAACTAGATCTTGTGGAACAGGAAGATCAG
EST: CAGTTTCTGATTGAAGGTTTATTTGCAATAAGAAAAGCAAAGTTTCAG GGCTATCCAGCTGTTCGTCCTGAACTAGATCTTGTGGAACAGGAAGATCAGEST: gi|193463794|gb|FK427018.1|FK427018
genomic: CAGTTTCTGATTGAAGGTTTATTTGCAATAAGAAAAGCAAAGTTTCAGgtacttcttt ... gcatttgcagGGCTATCCAGCTGTTCGTCCTGAACTAGATCTTGTGGAACAGGAAGATCAG
EST: TCAGTTTCTTGATTGAAGGTTTATTTGCAATAAGAAAAGCAAAGTTTCAG GGCTATCCAGCTGTTCGTCCTGAACTAGATCTTGTGGAACAGGAAGATCAG
genomic: TCAGTTTC-TGATTGAAGGTTTATTTGCAATAAGAAAAGCAAAGTTTCAGgtacttcttt ... gcatttgcagGGCTATCCAGCTGTTCGTCCTGAACTAGATCTTGTGGAACAGGAAGATCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTTGAGCGTTTTCGTGGAATTCTTCATGAAGGAGAAATTGACAAACGTGTTCAGTTTCTGATTGAAGGTTTATTTGCAATAAGAAAAGCAAAGTTTCAGgtacttcttttttattgtttgcgataccacatttacaaataacacaaaattcaatgcttttgttaatcaatttaaaggaatagtttgaaattgaaatgtattatgatggttacattgcatttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG