Sequence
atgc intronic sequence ATGC exonic sequenceTGTTCGCTACTCGTCATAGACAGAGGAAACCGAGCCATCAGGGAGATCCAACTCCATTTTGATGATTGTGCTTATCAATATGGCAGTGGATTCCCACTTGgtaaactaaatcatacatgattttctgtagaaattctgtcaagtgttattgttaatcaaatttagactgattgccttcaatgttacag
Basic information
species | Glycine max |
transcript | GLYMA08G39910.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G39910.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G23880.1 (Arabidopsis thaliana), 5'ss of exon 5
TGTTCGCTACTCGTCATAGACAGAGGAAACCGAGCCATCAGGGAGATCCAACTCCATTTTGATGATTGTGCTTATCAATATGGCAGTGGATTCCCACTTGgtaaactaaatcatacatgattttctgtagaaattctgtcaagtgttattgttaatcaaatttagactgattgc-cttcaatgttacag------------------------
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TGTTCCTTGCTAGTCATTGACCGAGGAAACCAAGCCATCAGAGAGATTCAACTCCATTTTGACGACTGTGCTGATCAGTATGGAAGTGGCTTTCCTCTGGgtaatatttacataccaaagttttccgtttgggtcccctcttgcattctt--cagtcatctctatctcaattactctttaatgtatctctgattcaatgctttaatattgcag
upper sequence: GLYMA08G39910.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G70280.1 (Arabidopsis thaliana), 5'ss of exon 4
TGTTCGCTACTCGTCATAGACAGAGGAAACCGAGCCATCAGGGAGATCCAACTCCATTTTGATGATTGTGCTTATCAATATGGCAGTGGATTCCCACTTGgtaaactaaatcatacatgattttctgtagaaattctgtcaagtgttattgttaatcaaatttagactgattgccttcaatgttacag
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TGTTCTCTGCTTGTTATTGACCGTGGAAACAAAGCTATCAGAGAGATTCAACTCCATTTCGATGACTGTGCTTATCAGTATGGAAGCGGGTTTCCTCTTGgtaaacttacaaaagtaccaaacttttttttatgtttgtctctttttttctttgaataactctgaattcaatgtattgcag-------
upper sequence: GLYMA08G39910.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv01s0026g00330.t01 (Vitis vinifera), 5'ss of exon 5
TGTTCGCTACTCGTCATAGACAGAGGAAACCGAGCCATCAGGGAGATCCAACTCCATTTTGATGATTGTGCTTATCAATATGGCAGTGGATTCCCACTTGgtaaactaaatcatacatgattttctgtagaaattctgtcaagtgttattgttaatcaaatttagactgattgccttcaatg-ttacag
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TGCTCCCTACTTGTCATAGACAGAGGAAACCAGGCAATTCGGGAGATCCAACTTCATTTTGATGACTGTGCTTATCAATATGGAAGTGGTTTCCCTCTAGgtaaactgatccatccagtatt--------gatctttgatacttctcaatcttga-caaatccatgtgaaatgttctccatgattgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|7147089|gb|AW509011.1|AW509011EST: ACTCCATTTTGATGATTGTGCTTATCAATATGGCAGTGGATTCCCACTTG GGATTGCAATGCTTGTTGGGGCTGGATTCTTTGGTTACATGCTGGCATTAC
genomic: ACTCCATTTTGATGATTGTGCTTATCAATATGGCAGTGGATTCCCACTTGgtaaactaaa ... aatgttacagGGATTGCAATGCTTGTTGGGGCTGGATTCTTTGGTTACATGCTGGCATTAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGTTCGCTACTCGTCATAGACAGAGGAAACCGAGCCATCAGGGAGATCCAACTCCATTTTGATGATTGTGCTTATCAATATGGCAGTGGATTCCCACTTGgtaaactaaatcatacatgattttctgtagaaattctgtcaagtgttattgttaatcaaatttagactgattgccttcaatgttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA