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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCAAGTATTCAGGAACCGGGGCGGCCATTGAATATGCAGTCTTACATTTAAAGgtaaaaaatagccatccactctctctctctctctctctctctctctctctctctctctctctctatatatatatatatatatatatatatatatatatat...

Basic information

species Glycine max
transcript GLYMA08G39510.2
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7284423|gb|AW597014.1|AW597014
EST:     AGTATTCAGGAACCGGGGCGGCCATTGAATATACTTTCTTACATTTAAAG                         GTGGAGAATATTGAGGTCATTGGGCACAGCTGCTGTGGAGGTATAAAGGGC
genomic: AGTATTCAGGAACCGGGGCGGCCATTGAATATGCAGTCTTACATTTAAAGgtaaaaaata ... tgtcttatagGTGGAGAATATTGTGGTCATTGGGCACAGCTGCTGTGGAGGTATAAAGGGC
EST: gi|192297727|gb|FG989962.1|FG989962
EST:     AGTATTCAGGAACCGGGGCGGCCATTGAATATGCAGTCTTACATTTAAAG                         GTGGAGAATATTGTGGTCATTGGGCACAGCTGCTGTGGAGGTATAAAGGGC
genomic: AGTATTCAGGAACCGGGGCGGCCATTGAATATGCAGTCTTACATTTAAAGgtaaaaaata ... tgtcttatagGTGGAGAATATTGTGGTCATTGGGCACAGCTGCTGTGGAGGTATAAAGGGC
EST: gi|20813035|gb|BQ297513.1|BQ297513
EST:     AGTATTCAGGAACCGGGGCGGCCATTGAATATGCAGTCTTACATTTAAAG                         GTGGAGAATATTGTGGTCATTGGGCACAGCTGCTGTGGAGGTATAAAGGGC
genomic: AGTATTCAGGAACCGGGGCGGCCATTGAATATGCAGTCTTACATTTAAAGgtaaaaaata ... tgtcttatagGTGGAGAATATTGTGGTCATTGGGCACAGCTGCTGTGGAGGTATAAAGGGC
EST: gi|192309131|gb|FG999400.1|FG999400
EST:     GGCCATTGAATATGCAGTCTTACATTTAAAG                         GTGGAGAATATTGTGGTCATTGGGCACAGCTGCTGTGGAGGTATAAAGGGC
genomic: GGCCATTGAATATGCAGTCTTACATTTAAAGgtaaaaaata ... tgtcttatagGTGGAGAATATTGTGGTCATTGGGCACAGCTGCTGTGGAGGTATAAAGGGC
EST: gi|19271202|gb|BM887458.1|BM887458
EST:     AGTATTCAGGAACCGGGGCGGCCATTGAATATGCAGTCTTACATTTAAAG                         GTGGAGAATATTGTGGTCATTGGGCACAGCTGCTGTGGAGGTATAAAGGGC
genomic: AGTATTCAGGAACCGGGGCGGCCATTGAATATGCAGTCTTACATTTAAAGgtaaaaaata ... tgtcttatagGTGGAGAATATTGTGGTCATTGGGCACAGCTGCTGTGGAGGTATAAAGGGC
EST: gi|192309132|gb|FG999401.1|FG999401
EST:     GGCCATTGAATATGCAGTCTTACATTTAAAG                         GTGGAGAATATTGTGGTCATTGGGCACAGCTGCTGTGGAGGTATAAAGGGC
genomic: GGCCATTGAATATGCAGTCTTACATTTAAAGgtaaaaaata ... tgtcttatagGTGGAGAATATTGTGGTCATTGGGCACAGCTGCTGTGGAGGTATAAAGGGC
EST: gi|192305002|gb|FG997128.1|FG997128
EST:     AGTATTCAGGAACCGGGGCGGCCATTGAATATGCAGTCTTACATTTAAAG                         GTGGAGAATATTGTGGTCATTGGGCACAGCTGCTGTGGAGGTATAAAGGGC
genomic: AGTATTCAGGAACCGGGGCGGCCATTGAATATGCAGTCTTACATTTAAAGgtaaaaaata ... tgtcttatagGTGGAGAATATTGTGGTCATTGGGCACAGCTGCTGTGGAGGTATAAAGGGC