Sequence
atgc intronic sequence ATGC exonic sequenceGGTGGTCCCATATGGAGATCCTAATGATCCTCACTATAGGAAAAATGCTTTTGATGCTGGGGAAGATGGCTTGGGTAAAAATTCTCATTCTCTGAAGAAGgtaaaggcatttgcttatattccattcattcttgtctttatttttcctcctttctcaatgtagatgaaattgaatttgttttgcataatgtcattatttcag
Basic information
species | Glycine max |
transcript | GLYMA08G38990.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G38990.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os04g40040.1 (Oryza sativa), 5'ss of exon 7
GGTGGTCCCATATGGAGATCCTAATGATCCTCACTATAGGAAAAATGCTTTTGATGCTGGGGAAGATGGCTTGGGTAAAAATTCTCATTCTCTGAAGAAGgtaaaggcatttgcttatattccattcattcttgtctttatttttcctcctttctcaatgtagatgaaattgaatttgttttgcataatgtcattatttcag
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GGTTGTTCCTTATGGAGATCCCAATGAACCACATTATCGCAAGAATGCTTTTGATGCTGGAGAAGATGGACTTGGGAAGAATGCTCATTCTCTTAAGAGGgtg------cttgctcagttcttaatgattttttacctccagagagttttaactttcatctgactattatatgcctttttttttgtag--------------
upper sequence: GLYMA08G38990.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G147884_T01 (Zea mays), 5'ss of exon 6
GGTGGTCCCATATGGAGATCCTAATGATCCTCACTATAGGAAAAATGCTTTTGATGCTGGGGAAGATGGCTTGGGTAAAAATTCTCATTCTCTGAAGAAGgtaaaggcattt-gcttatattccattcattcttgtctttatttttcctcctttctcaatgtagatgaaattgaatttgttttgcataatgtcattatttcag
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GGTTGTTCCTTATGGAGATCCAAGTGAACCACATTATCGCAAGAATGCATTTGATGCTGGAGAAGATGGACTTGGAAAAAATGCTCATTCTCTTAAGAAGgttattttattcagttcttgatgtgtatactttgacgttcaaaatttttctttgatt--tgactatgctctttaacct-ttttgtgcag--------------
upper sequence: GLYMA08G38990.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv00s0225g00090.t01 (Vitis vinifera), 5'ss of exon 6
GGTGGTCCCATATGGAGATCCTAATGATCCTCACTATAGGAAAAATGCTTTTGATGCTGGGGAAGATGGCTTGGGTAAAAATTCTCATTCTCTGAAGAAGgtaaaggcatttgcttatattccattcattcttgtctt--tatttttcctcctttct-caatgtagatgaaattga--------atttgttttgcataatgtcattatttcag----------
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GGTGGTTCCTTATGGGGATCCAAATGATCCCCATTATAGAAAGAATGCATTTGATGCTGGTGAAGATGGGCTGGGTAAAAATGCACATTCTCTAAAGAAGgttagagtgcttactcctatgctgattttctttgtattactattgttgttgttatatattagttacatcaggctaatcataatgatttttttttttttttttggtcatgtctgtgtggtgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193542102|gb|FK496214.1|FK496214EST: TTGATGCTGGGGAAGATGGCTTGGGTAAAAATTCTCATTCTCTGAAGAAG GGCTGTGATTGTTTAGGCTATATCAAATACTTTGATGCGCATTTCACAAAC
genomic: TTGATGCTGGGGAAGATGGCTTGGGTAAAAATTCTCATTCTCTGAAGAAGgtaaaggcat ... attatttcagGGCTGTGATTGTTTAGGCTATATCAAATACTTTGATGCGCATTTCACAAAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGTGGTCCCATATGGAGATCCTAATGATCCTCACTATAGGAAAAATGCTTTTGATGCTGGGGAAGATGGCTTGGGTAAAAATTCTCATTCTCTGAAGAAGgtaaaggcatttgcttatattccattcattcttgtctttatttttcctcctttctcaatgtagatgaaattgaatttgttttgcataatgtcattatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG