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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATCACCAACAGGGTAGATGGCAAGCAAGAATTGGCCGAGTTGCGGGAAACAAGGATCTATACTTGGGAACATTTTgtaagtttttagcatctgccattgttatcttgctttatacagtatgattgttggatttaattaaggcttaaatatgttagagatccttaatatatatcca...

Basic information

species Glycine max
transcript GLYMA08G38190.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G38190.1 (Glycine max), 5'ss of exon 6
lower sequence: AT5G10510.3 (Arabidopsis thaliana), 5'ss of exon 7
-----------------------GCATCACCAACAGGGTAGATGGCAAGCAAGAATTGGCCGAGTTGCGGGAAACAAGGATCTATACTTGGGAACATTTTgtaagtttttagcatctgccattgttatcttgctttatacagtatgattgttggatttaattaaggcttaaatatgttagagatccttaatatatatcca
                       |||||| ||||| ||  | ||||||||||| |||||||||||||| || ||||| ||||| ||| | ||||| ||| ||| ||    |  |||| | |   |  ||| |||  ||  |  |  ||  |||  | |  ||||   |||  ||     |   |  ||  | ||      
TCGATATACCGAGGTGTTACAAGGCATCATCAACAAGGACGTTGGCAAGCAAGGATTGGCCGAGTTGCTGGGAACAAAGATCTTTACCTTGGAACCTTTGgtatgt----aaaatcttcaaacttggtctagcta-atttaaca--atcattgtctgtggttaa---ttagttagtcctggtgttgttgttgtag-----

upper sequence: GLYMA08G38190.1 (Glycine max), 5'ss of exon 6
lower sequence: AT5G65510.1 (Arabidopsis thaliana), 5'ss of exon 7
-----------------------GCATCACCAACAGGGTAGATGGCAAGCAAGAATTGGCCGAGTTGCGGGAAACAAGGATCTATACTTGGGAACATTTTgtaagtttttagcatctgccattgttatcttgctttatacagtatgattgttggatttaattaaggcttaaatatgt-tagagatccttaatatatatcca
                       |||||| ||||| ||| | |||||||||||||| ||||| || || |||||||| ||||| ||| | ||||| ||| ||||    ||| | |     |    | || |  | |  ||  |   |      |   | ||| |  | || |||||| || ||                  
TCAATATATAGAGGTGTCACAAGGCATCATCAACAAGGTCGCTGGCAAGCAAGAATCGGCCGTGTCGCAGGAAACAAAGATCTTTACCTCGGAACCTTTGgtaaaacgttatcttagtagacaaatgtcctattcttcaccctgaaaaatccag---tcattgattcgtatatatgtgtatag------------------

upper sequence: GLYMA08G38190.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv00s0772g00020.t01 (Vitis vinifera), 5'ss of exon 6
GCATCACCAACAGGGTAGATGGCAAGCAAGAATTGGCCGAGTTGCGGGAAACAAGGATCTATACTTGGGAACATTTTgtaagt------ttttagcatctgccattgttatcttgctttatacagtatgattgttggatttaattaaggcttaaatatgttagagatccttaatatatatcca
|||||| ||||| ||| ||||||||||||| || || |||||||| ||||| || || || ||| |||| |||||| |||| |      ||||| | |  |  | || || |  | || |   | ||   ||| |  |      | || ||| |  ||||      ||   | | |  |    
GCATCATCAACAAGGTCGATGGCAAGCAAGGATAGGTCGAGTTGCTGGAAATAAAGACCTGTACCTGGGGACATTTGgtaaatatgcaattttaactttagataatgataacgagattaacg-actagacttgctcaaacctggtgag-cttcagaatgtcta--ttctggagtgtggact--

upper sequence: GLYMA08G38190.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv00s1291g00010.t01 (Vitis vinifera), 5'ss of exon 7
GCATCACCAACAGGGTAGATGGCAAGCAAGAATTGGCCGAGTTGCGGGAAACAAGGATCTATACTTGGGAACATTTTgtaagtttttagcatctgccattgttatcttgctttat-acagtatgattgttggatttaattaaggcttaaatatgttagagatccttaatatatatcca------------
|||||| ||||| ||| ||||||||||||| || || |||||||| ||||| || || || ||| |||| |||||| ||||         || ||| ||| | |  ||   | || | |    ||||   | | |  | |  |||| |||  || | ||| | |  ||| | ||| |             
GCATCATCAACAAGGTCGATGGCAAGCAAGGATAGGTCGAGTTGCTGGAAATAAAGACCTGTACCTGGGGACATTTGgtaa---------atatgcaattttaactttagataatgataacgagattaacg-actagact--ggctcaaacctggt-gagcttcagaatgtctattctggagtgtggact

upper sequence: GLYMA08G38190.1 (Glycine max), 5'ss of exon 6
lower sequence: PP1S131_131V6.1 (Physcomitrella patens), 5'ss of exon 6
-----------------------GCATCACCAACAGGGTAGATGGCAAGCAAGAATTGGCCGAGTTGCGGGAAACAAGGATCTATACTTGGGAACATTTTgtaagtttttagcatctgccattgttatcttgctttatacagtatgattgttggatttaattaaggc--ttaaatatgttagagatccttaatatatatcca---------------------------------------------------------------------------
                        || || || || || |||||||||||| | ||||| |||||||||||||||||||| || ||| |||| || |   ||||||        |||  |||   | || |||    ||  | || | | | |      ||   ||   ||     || |||   | |  |   |   ||||                                                                           
TCCATGTATCGAGGGGTGACGAGACACCATCAGCATGGGAGATGGCAAGCACGCATTGGGCGAGTTGCGGGAAACAAGGACCTGTACCTGGGCACTTACAgtaagtgc---aggtctcacatgaat-tcgtgcacagtagcggattactctcgctccatatagcggtcatttctcctgataggacttccgacgttgcttccagagacgtcggagtgttctggatctagatgtgcccatgttatctaaatgtttgaataaactggctgtgtaattcag