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TCCTGCAAATTTCCACGTTTACACTGCATTGCTTAAACCTCATGAAAGAATCATGGCACTTGATCTTCCTCATGGTGGCCATCTTTCTCACGGATATCAGgtactttgaagtttgaacttccatcattcatttcatcttataatgaaatgaaatctgtagtgtgtatatggctatttaataattattgtctttttatttt...
species | Glycine max |
transcript | GLYMA08G37270.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TCATGGCACTTGATCTTCCTCATGGTGGCCATCTTTCTCACGGATATCAG ACTGATACCAAAAAGATATCTGCAGTCTCGATATTTTTTGAGACAATGCCAEST: gi|209699627|gb|BW655719.1|BW655719
genomic: TCATGGCACTTGATCTTCCTCATGGTGGCCATCTTTCTCACGGATATCAGgtactttgaa ... tactatgcagACTGATACCAAAAAGATATCTGCAGTCTCGATATTTTTTGAGACAATGCCA
EST: TCATGGCACTTGATCTTCCTCATGGTGGCCATCTTTCTCACGGATATCAG ACTGATACCAAAAAGATATCTGCAGTCTCGATATTTTTTGAGACAATGCCAEST: gi|209715301|gb|BW654188.1|BW654188
genomic: TCATGGCACTTGATCTTCCTCATGGTGGCCATCTTTCTCACGGATATCAGgtactttgaa ... tactatgcagACTGATACCAAAAAGATATCTGCAGTCTCGATATTTTTTGAGACAATGCCA
EST: TCATGGCACTTGATCTTCCTCATGGTGGCCATCTTTCTCACGGATATCAG ACTGATACCAAAAAGATATCTGCAGTCTCGATATTTTTTGAGACAATGCCAEST: gi|209699197|gb|BW656186.1|BW656186
genomic: TCATGGCACTTGATCTTCCTCATGGTGGCCATCTTTCTCACGGATATCAGgtactttgaa ... tactatgcagACTGATACCAAAAAGATATCTGCAGTCTCGATATTTTTTGAGACAATGCCA
EST: TCATGGCACTTGATCTTCCTCATGGTGGCCATCTTTCTCACGGATATCAG ACTGATACCAAAAAGATATCTGCAGTCTCGATATTTTTTGAGACAATGCCAEST: gi|120529377|gb|EH257511.1|EH257511
genomic: TCATGGCACTTGATCTTCCTCATGGTGGCCATCTTTCTCACGGATATCAGgtactttgaa ... tactatgcagACTGATACCAAAAAGATATCTGCAGTCTCGATATTTTTTGAGACAATGCCA
EST: TCATGGCACTTGATCTTCCTCATGGTGGCCATCTTTCTCACGGATATCAG ACTGATACCAAAAAGATATCTGCAGTCTCGATATTTTTTGAGACAATGCCAEST: gi|213588396|gb|DB967882.1|DB967882
genomic: TCATGGCACTTGATCTTCCTCATGGTGGCCATCTTTCTCACGGATATCAGgtactttgaa ... tactatgcagACTGATACCAAAAAGATATCTGCAGTCTCGATATTTTTTGAGACAATGCCA
EST: TCATGGCACTTGATCTTCCTCATGGTGGCCATCTTTCTCACGGATATCAG ACTGATACCAAAAAGATATCTGCAGTCTCGATATTTTTTGAGACAATGCCAEST: gi|209704314|gb|BW683546.1|BW683546
genomic: TCATGGCACTTGATCTTCCTCATGGTGGCCATCTTTCTCACGGATATCAGgtactttgaa ... tactatgcagACTGATACCAAAAAGATATCTGCAGTCTCGATATTTTTTGAGACAATGCCA
EST: TCATGGCACTTGATCTTCCTCATGGTGGCCATCTTTCTCACGGATATCAG ACTGATACCAAAAAGATATCTGCAGTCTCGATANNNNNNNGAGACA-TGCCEST: gi|120530707|gb|EH258840.1|EH258840
genomic: TCATGGCACTTGATCTTCCTCATGGTGGCCATCTTTCTCACGGATATCAGgtactttgaa ... tactatgcagACTGATACCAAAAAGATATCTGCAGTCTCGATATTTTTT-GAGACAATGCC
EST: TCATGGCACTTGATCTTCCTCATGGTGGCCATCTTTCTCACGGATATCAG ACTGATACCAAAAAGATATCTGCAGTCTCGATATTTTTTGAGACAATGCCAEST: gi|120533051|gb|EH261184.1|EH261184
genomic: TCATGGCACTTGATCTTCCTCATGGTGGCCATCTTTCTCACGGATATCAGgtactttgaa ... tactatgcagACTGATACCAAAAAGATATCTGCAGTCTCGATATTTTTTGAGACAATGCCA
EST: TCATGGCACTTGATCTTCCTCATGGTGGCCATCTTTCTCACGGATATCAG ACTGATACCAAAAAGATATCTGCAGTCTCGATATTTTTTGAGACAATGCCAEST: gi|209724195|gb|BW659729.1|BW659729
genomic: TCATGGCACTTGATCTTCCTCATGGTGGCCATCTTTCTCACGGATATCAGgtactttgaa ... tactatgcagACTGATACCAAAAAGATATCTGCAGTCTCGATATTTTTTGAGACAATGCCA
EST: TCATGGCACTTGATCTTCCTCATGGTGGCCATCTTTCTCACGGATATCAG ACTGATACCAAAAAGATATCTGCAGTCTCGATATTTTTTGAGACAATGCCAEST: gi|209715019|gb|BW650870.1|BW650870
genomic: TCATGGCACTTGATCTTCCTCATGGTGGCCATCTTTCTCACGGATATCAGgtactttgaa ... tactatgcagACTGATACCAAAAAGATATCTGCAGTCTCGATATTTTTTGAGACAATGCCA
EST: TCATGGCACTTGATCTTCCTCATGGTGGCCATCTTTCTCACGGATATCAG ACTGATACCAAAAAGATATCTGCAGTCTCGATATTTTTTGAGACAATGCCAEST: gi|209709691|gb|BW668227.1|BW668227
genomic: TCATGGCACTTGATCTTCCTCATGGTGGCCATCTTTCTCACGGATATCAGgtactttgaa ... tactatgcagACTGATACCAAAAAGATATCTGCAGTCTCGATATTTTTTGAGACAATGCCA
EST: TCATGGCACTTGATCTTCCTCATGGTGGCCATCTTTCTCACGGATATCAG ACTGATACCAAAAAGATATCTGCAGTCTCGATATTTTTTGAGACAATGCCAEST: gi|14205774|gb|BG839452.1|BG839452
genomic: TCATGGCACTTGATCTTCCTCATGGTGGCCATCTTTCTCACGGATATCAGgtactttgaa ... tactatgcagACTGATACCAAAAAGATATCTGCAGTCTCGATATTTTTTGAGACAATGCCA
EST: TCATGGCACTTGATCTTCCTCATGGTGGCCATCTTTCTCACGGATATCAG ACTGATACCAAAAAGATATCTGCAGTCTCGATATTTTTTGAGACAATGCCAEST: gi|209700117|gb|BW652975.1|BW652975
genomic: TCATGGCACTTGATCTTCCTCATGGTGGCCATCTTTCTCACGGATATCAGgtactttgaa ... tactatgcagACTGATACCAAAAAGATATCTGCAGTCTCGATATTTTTTGAGACAATGCCA
EST: TCATGGCACTTGATCTTCCTCATGGTGGCCATCTTTCTCATGGATATCAG ACTGATACCAAAAAGATATCTGCAGTCTCGATATTTTTTGAGACAATGCCAEST: gi|209708166|gb|BW673829.1|BW673829
genomic: TCATGGCACTTGATCTTCCTCATGGTGGCCATCTTTCTCACGGATATCAGgtactttgaa ... tactatgcagACTGATACCAAAAAGATATCTGCAGTCTCGATATTTTTTGAGACAATGCCA
EST: TCATGGCACTTGATCTTCCTCATGGTGGCCATCTTTCTCACGGATATCAG ACTGATACCAAAAAGATATCTGCAGTCTCGATAEST: gi|209715940|gb|BW650957.1|BW650957
genomic: TCATGGCACTTGATCTTCCTCATGGTGGCCATCTTTCTCACGGATATCAGgtactttgaa ... tactatgcagACTGATACCAAAAAGATATCTGCAGTCTCGATA
EST: TCATGGCACTTGATCTTCCTCATGGTGGCCATCTTTCTCACGGATATCAG ACTGATACCAAAAAGATATCTGCAGTCTCGATATTTTTTGAGACAATGCCAEST: gi|213599231|gb|DB962282.1|DB962282
genomic: TCATGGCACTTGATCTTCCTCATGGTGGCCATCTTTCTCACGGATATCAGgtactttgaa ... tactatgcagACTGATACCAAAAAGATATCTGCAGTCTCGATATTTTTTGAGACAATGCCA
EST: TCATGGCACTTGATCTTCCTCATGGTGGCCATCTTTCTCACGGATATCAG ACTGATACCAAAAAGATATCTGCAGTCTCGATATTTTTTGAGACEST: gi|213597587|gb|DB962553.1|DB962553
genomic: TCATGGCACTTGATCTTCCTCATGGTGGCCATCTTTCTCACGGATATCAGgtactttgaa ... tactatgcagACTGATACCAAAAAGATATCTGCAGTCTCGATATTTTTTGAGAC
EST: TCATGGCACTTGATCTTCCTCATGGTGGCCATCTTTCTCACGGATATCAG ACTGATACCAAAAAGATATCTGCAGEST: gi|213617635|gb|DB969347.1|DB969347
genomic: TCATGGCACTTGATCTTCCTCATGGTGGCCATCTTTCTCACGGATATCAGgtactttgaa ... tactatgcagACTGATACCAAAAAGATATCTGCAG
EST: TCATGGCACTTGATCTTCCTCATGGTGGCCATCTTTCTCACGGATATCAG ACTGATACCAAAAEST: gi|209727383|gb|BW651931.1|BW651931
genomic: TCATGGCACTTGATCTTCCTCATGGTGGCCATCTTTCTCACGGATATCAGgtactttgaa ... tactatgcagACTGATACCAAAA
EST: TCATGGCACTTGATCTTCCTCATGGTGGCCATCTTTCTCACGGATATCAG ACTGATACCAAAAAGATATCTGCAGTCTCGATATTTTTTGAGACAATGCCAEST: gi|209725631|gb|BW663120.1|BW663120
genomic: TCATGGCACTTGATCTTCCTCATGGTGGCCATCTTTCTCACGGATATCAGgtactttgaa ... tactatgcagACTGATACCAAAAAGATATCTGCAGTCTCGATATTTTTTGAGACAATGCCA
EST: TCATGGCACTTGATCTTCCTCATGGTGGCCATCTTTCTCACGGATATCAG ACTGATACCAAAAAGATATCTGCAGTCTCGATATTTTTTGAGANCA-TGCCEST: gi|213587994|gb|DB957453.1|DB957453
genomic: TCATGGCACTTGATCTTCCTCATGGTGGCCATCTTTCTCACGGATATCAGgtactttgaa ... tactatgcagACTGATACCAAAAAGATATCTGCAGTCTCGATATTTTTTGAGA-CAATGCC
EST: TCATGGCACTTGATCTTCCTCATGGTGGCCATCTTTCTCACGGATATCAG ACTGATACCAAAAAGATATCTGCAGTCTCGATATTTTTTGAGACAATGCCAEST: gi|120533233|gb|EH261366.1|EH261366
genomic: TCATGGCACTTGATCTTCCTCATGGTGGCCATCTTTCTCACGGATATCAGgtactttgaa ... tactatgcagACTGATACCAAAAAGATATCTGCAGTCTCGATATTTTTTGAGACAATGCCA
EST: TCATGGCACTTGATCTTCCTCATGGTGGCCATCTTTCTCACGGATATCAG ACTGATACCAAAAAGATATCTGCAGTCTCGATATTTTTTGAGACAATGCCAEST: gi|209710568|gb|BW676520.1|BW676520
genomic: TCATGGCACTTGATCTTCCTCATGGTGGCCATCTTTCTCACGGATATCAGgtactttgaa ... tactatgcagACTGATACCAAAAAGATATCTGCAGTCTCGATATTTTTTGAGACAATGCCA
EST: TCATGGCACTTGATCTTCCTCATGGTGGCCATCTTTCTCACGGATATCAG ACTGATACCAAAAAGATATCTGCAGTCTCGATATTTTTTGAGACAATGCCAEST: gi|22539787|gb|BU089630.1|BU089630
genomic: TCATGGCACTTGATCTTCCTCATGGTGGCCATCTTTCTCACGGATATCAGgtactttgaa ... tactatgcagACTGATACCAAAAAGATATCTGCAGTCTCGATATTTTTTGAGACAATGCCA
EST: TCATGGCACTTGATCTTCCTCATGGTGGCCATCTTTCTCACGGATATCAG ACTGATACCAAAAAGATATCTGCAGTCTCGATATTGTTTGAGACAATGCCA
genomic: TCATGGCACTTGATCTTCCTCATGGTGGCCATCTTTCTCACGGATATCAGgtactttgaa ... tactatgcagACTGATACCAAAAAGATATCTGCAGTCTCGATATTTTTTGAGACAATGCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCTGCAAATTTCCACGTTTACACTGCATTGCTTAAACCTCATGAAAGAATCATGGCACTTGATCTTCCTCATGGTGGCCATCTTTCTCACGGATATCAGgtactttgaagtttgaacttccatcattcatttcatcttataatgaaatgaaatctgtagtgtgtatatggctatttaataattattgtctttttatttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaatgaaa