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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTCAAGTGCCATCTCCAGTGCTGATCTTTTTGGTGACTCAAGAGACAACAACATTGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAGgtattccttaccttgtactggatttggaaatttcattattcatgttatttgtcattcgaacaatgaaatgataatcaaattagtggcattagttcctgtattgatgttggatgtacacctccctcccctctgttttgcag

Basic information

species Glycine max
transcript GLYMA08G36700.2
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58017014|gb|CX703756.1|CX703756
EST:     ACAACATTGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAG                         GCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAG
genomic: ACAACATTGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAGgtattcctta ... tgttttgcagGCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAG
EST: gi|193405135|gb|FK371658.1|FK371658
EST:     ATCTTACTGCTGGTGACCTCATCAATCGATTATC-TTCCAG                         GCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAG
genomic: ATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAGgtattcctta ... tgttttgcagGCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAG
EST: gi|298194738|gb|HO043210.1|HO043210
EST:     ACAACATTGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAG                         GCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAG
genomic: ACAACATTGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAGgtattcctta ... tgttttgcagGCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAG
EST: gi|57575109|gb|CX548084.1|CX548084
EST:     ACAACATTGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAG                         GCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAG
genomic: ACAACATTGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAGgtattcctta ... tgttttgcagGCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAG
EST: gi|22524808|gb|BU083619.1|BU083619
EST:     ACAACATTGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAG                         GCACAACAGGATCTC
genomic: ACAACATTGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAGgtattcctta ... tgttttgcagGCACAACAGGATCTC
EST: gi|208268643|gb|GE069414.1|GE069414
EST:     ACAACATTGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAG                         GCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAG
genomic: ACAACATTGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAGgtattcctta ... tgttttgcagGCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAG
EST: gi|58015077|gb|CX701819.1|CX701819
EST:     ACAACATTGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAG                         GCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAG
genomic: ACAACATTGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAGgtattcctta ... tgttttgcagGCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAG
EST: gi|31311653|gb|CD396856.1|CD396856
EST:     ACAACATTGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAG                         GCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAG
genomic: ACAACATTGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAGgtattcctta ... tgttttgcagGCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAG