Sequence
atgc intronic sequence ATGC exonic sequenceAGCTCTCATTGCTCACTTCCAAAATTCAAGCTTGATGAATGAGGATAAGCGCTGCAGGCCTATCCTCTTCAACACCGATGGCCCTAATGCCGGTGACCAGgtataaatttcttttaagatccattcatcacgtacattacaggtattcttacctgcttgaaacataatatataatccaggcagccatttgaaatttgaacctctatttttattaagagatgaagctacaaaacggctactaactttgctaggaactcag
Basic information
species | Glycine max |
transcript | GLYMA08G28860.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G28860.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os02g31290.1 (Oryza sativa), 5'ss of exon 14
AGCTCTCATTGCTCACTTCCAAAATTCAAGCTTGATGAATGAGGATAAGCGCTGCAGGCCTATCCTCTTCAACACCGATGGCCCTAATGCCGGTGACCAGgtataaatttcttttaagatccattcatcacgtacattacaggtattcttacctgcttgaaacataatatataatccaggcagccatttgaaatttgaacctctatttttattaagagatgaagctacaaaacggctactaactttgctaggaactcag
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AGCTCTTATTGCTCACTTCCAGAACTCCAGTTTGATGAATGAGGACAAGCGCTGCCGCCCCATACTATTCCATTCGGATGGTCCTAATGCAGGAGATCAGgtatgatctttctctc---tctctctctctctctctctc----tctctctctctcgttgataaatgg-----agttaaagcagc-agatgacacttggacacagtttgctgtt----------------------------------------------
upper sequence: GLYMA08G28860.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G451716_T01 (Zea mays), 5'ss of exon 14
AGCTCTCATTGCTCACTTCCAAAATTCAAGCTTGATGAATGAGGATAAGCGCTGCAGGCCTATCCTCTTCAACACCGATGGCCCTAATGCCGGTGACCAGgtataaatttcttttaagatccattcatcacgtacattacaggtattcttacctgcttgaaacataatatataatccaggcagccatttgaaatt--tgaacctctatttttattaagagatgaagctacaaaacggctactaactttgctaggaactcag
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AGCTCTAGTTGCTCATTTCCAGAACTCAAGTTTGATGAATGAGGATAAACGCTGCCGCCCTATACTCTTCCACTCTGATGGTCCGAATGCAGGAGATCAAgtatg---ctctct----acttgtccatcactctc-----------tattatctg-ttgcatcatggtatatga-ctatatggtgactagtagttcctgaactctgctgcttatcgcata-----------------------------------------
upper sequence: GLYMA08G28860.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv00s0239g00110.t01 (Vitis vinifera), 5'ss of exon 4
AGCTCTCATTGCTCACTTCCAAAATTCAAGCTTGATGAATGAGGATAAGCGCTGCAGGCCTATCCTCTTCAACACCGATGGCCCTAATGCCGGTGACCAGgtataa-atttcttttaagatccattcatcacgtacattacaggtattcttacctgcttgaaacataatatataatccaggcagccatttgaaatttgaacctctatttttattaagagatgaagctacaaaacggctactaactttgctaggaactcag
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TGCTCTTACTGCTCATTTCCAAAACTCGAGCTTGATGAATGAGGATAAACATTGCCGCCCTATTCTATTTCATACTAATGGTCCAAATGCAGGTGATCAGgtaggacatctgacataaagtatgttctc----tattttgttattctttatactaattggtaatg-actat-taatgtatg-----att----acttgtatacctttccttgata---------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|7590134|gb|AW705893.1|AW705893EST: GCTGCAGGCCTATCCTCTTCAACACCGATGGCCCTAATGCCGGTGACCAG GTTCCTTTCCCAGTTGGCATTAACATTCGCAACAAAGCTGGAAGAGTGAGA
genomic: GCTGCAGGCCTATCCTCTTCAACACCGATGGCCCTAATGCCGGTGACCAGgtataaattt ... aggaactcagGTTCCTTTCCCAGTTGGCATTAACATTCGCAACAAAGCTGGAAGAGTGAGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGCTCTCATTGCTCACTTCCAAAATTCAAGCTTGATGAATGAGGATAAGCGCTGCAGGCCTATCCTCTTCAACACCGATGGCCCTAATGCCGGTGACCAGgtataaatttcttttaagatccattcatcacgtacattacaggtattcttacctgcttgaaacataatatataatccaggcagccatttgaaatttgaacctctatttttattaagagatgaagctacaaaacggctactaactttgctaggaactcag
- - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG