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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTGAAACACCAAAGGACCACAGAAAGGCCAAGCCTTTCCATGATCACGTTTTTGTTTTCTCAATAGTTGATGACCATATATGGTTCCGGAATTATCAGgtttgtggttgtatttgtttaatatataaagaatgtctgttacctattgcattaatttacaggttataatatgcagatttgttgttttggaatccattcc...

Basic information

species Glycine max
transcript GLYMA08G28320.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G28320.2 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os02g37870.1 (Oryza sativa), 5'ss of exon 5
ATTTGAAACACCAAAGGACCACAGAAAGGCCAAGCCTTTCCATGATCACGTTTTTGTTTTCTCAATAGTTGATGACCATATATGGTTCCGGAATTATCAGg---tttgtggttgtatttgtttaatatataaagaatgtctgttacctattgcattaatttacaggttataatat-gcagatttgttgttttggaatccattcc-----
|||||  || ||||| || ||  ||||||| |||||||| ||||| || || ||||| ||||| || |||||||||||| | |||||  | ||||||||||   | | |   | | |||||||  |  ||    | |  ||  | ||  || ||   | |   || |  ||  || |      | ||    |   ||| | |       
ATTTGCTACTCCAAAAGATCATCGAAAGGCAAAGCCTTTTCATGACCATGTGTTTGTCTTCTCTATCGTTGATGACCATGTTTGGTTTAGAAATTATCAGgtaatatattagtctgtttgttttcttaattttcattaactcctgccagttacaagcaatagaagttcctagcattgtctgaatattaccgtatgatcaactttgtcag

upper sequence: GLYMA08G28320.2 (Glycine max), 5'ss of exon 6
lower sequence: AT3G15460.1 (Arabidopsis thaliana), 5'ss of exon 5
ATTTGAAACACCAAAGGACCACAGAAAGGCCAAGCCTTTCCATGATCACGTTTTTGTTTTCTCAATAGTTGATGACCATATATGGTTCCGGAATTATCAGgtttgtggttgtatttgtttaatatataaagaatgtctgttacctattgcattaatttacaggttataatatgcagatttgttgttttggaatccattcc
 |||| ||  ||  |||  || || ||| | || |||| |||||| || || ||||||||||| || ||||||||||||||||||||||| ||||| |||||  || |   | || |  |     ||        |   || |   ||| |    |||    |||  | ||  ||    |    ||   |          
TTTTGGAATTCCCGAGGGACATAGGAAGTCTAAACCTTACCATGACCATGTGTTTGTTTTCTCCATTGTTGATGACCATATATGGTTCCGTAATTACCAGgtaagttgaaattttagcatctctcatgctctcatttcatttcagtttggaaacgtttc---gtttaactagccaaggcttccattgcag----------

upper sequence: GLYMA08G28320.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv07s0005g04550.t01 (Vitis vinifera), 5'ss of exon 5
ATTTGAAACACCAAAGGACCACAGAAAGGCCAAGCCTTTCCATGATCACGTTTTTGTTTTCTCAATAGTTGATGACCATATATGGTTCCGGAATTATCAGgtttgtg--gttgtatttgtttaatatataaagaatgtctgttacctattgcattaatttacaggttataatatgcagatttgttgttttggaatccattcc-
||||| ||| || ||||| ||||| || || || ||||  |||||||| || |||| ||||||| | | |||||| ||||||||||||||||| || |||||| |||  |||  | |  |    | | | |   |  |   |    || |   |  | || || ||  ||   |  || |    |     || ||  |     
ATTTGGAACTCCGAAGGAGCACAGGAAAGCTAAACCTTATCATGATCATGTCTTTGCTTTCTCACTTGCTGATGATCATATATGGTTCCGGAACTACCAGgttcgtgtagttcaaatcttcatctttgtgatttagattcatagtgtaat---tctaattgcatgtcttatattttaggtaaaataaggaggcattgaaataa

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151406729|gb|EV276544.1|EV276544
EST:     TTTTTGTTTTCTCAATAGTTGATGACCATATATGGTTCCGGAATTATTAG                         ATCTCTGCTCATCATAATGAGTCGGACAAATTACCTAGAGGTGGCCTTGAT
genomic: TTTTTGTTTTCTCAATAGTTGATGACCATATATGGTTCCGGAATTATCAGgtttgtggtt ... tcccttgcagATCTCTGCTCATCATAATGAGTCGGACAAATTACCTAGAGGTGGCCTTGAT
EST: gi|10253404|gb|BE821170.1|BE821170
EST:     TTTTTGTTTTCTCAATAGTTGATGACCATATATGGTTCCGGAATTATCAG                         ATCTCTGCTCATCATAATGAGTCGGACAAATTACCTAGAGGTGGCCTTGAT
genomic: TTTTTGTTTTCTCAATAGTTGATGACCATATATGGTTCCGGAATTATCAGgtttgtggtt ... tcccttgcagATCTCTGCTCATCATAATGAGTCGGACAAATTACCTAGAGGTGGCCTTGAT
EST: gi|13789330|gb|BG651921.1|BG651921
EST:     TTTTTGTTTTCTCAATAGTTGATGACCATATATGGTTCCGGAATTATCAG                         ATCTCTGCTCATCATAATGAGTCGGACAAATTACCTAGAGGTGGCCTTGAT
genomic: TTTTTGTTTTCTCAATAGTTGATGACCATATATGGTTCCGGAATTATCAGgtttgtggtt ... tcccttgcagATCTCTGCTCATCATAATGAGTCGGACAAATTACCTAGAGGTGGCCTTGAT
EST: gi|151396331|gb|EV266208.1|EV266208
EST:     TTTTTGTTTTCTCAATAGTTGATGACCATATATGGTTCCGGAATTATCAG                         ATCTCTGCTCATCATAATGAGTCGGACAAATTACCTAGAGGTGGCCTTGAT
genomic: TTTTTGTTTTCTCAATAGTTGATGACCATATATGGTTCCGGAATTATCAGgtttgtggtt ... tcccttgcagATCTCTGCTCATCATAATGAGTCGGACAAATTACCTAGAGGTGGCCTTGAT
EST: gi|51342958|gb|CO983700.1|CO983700
EST:     TTTTTGTTTTCTCAATAGTTGATGACCATATATGGTTCCGGAATTATCAG                         ATCTCTGCTCATCATAATGAGTCGGACAAATTACCTAGAGGTGGCCTTGAT
genomic: TTTTTGTTTTCTCAATAGTTGATGACCATATATGGTTCCGGAATTATCAGgtttgtggtt ... tcccttgcagATCTCTGCTCATCATAATGAGTCGGACAAATTACCTAGAGGTGGCCTTGAT
EST: gi|151412110|gb|EV281922.1|EV281922
EST:     TTTTTGTTTTCTCAATAGTTGATGACCATATATGGTTCTGGAATTATCAG                         ATCTCTGCTCATCATAATGAGTCGGACAAATTACCTAGAGGTGGCCTTGAT
genomic: TTTTTGTTTTCTCAATAGTTGATGACCATATATGGTTCCGGAATTATCAGgtttgtggtt ... tcccttgcagATCTCTGCTCATCATAATGAGTCGGACAAATTACCTAGAGGTGGCCTTGAT
EST: gi|58018455|gb|CX705197.1|CX705197
EST:     TTTTTGTTTTCTCAATAGTTGATGACCATATATGGTTCCGGAATTATCAG                         ATCTCTGCTCATCATAATGAGTCGGACAAATTACCTAGAGGTGGCCTTGAT
genomic: TTTTTGTTTTCTCAATAGTTGATGACCATATATGGTTCCGGAATTATCAGgtttgtggtt ... tcccttgcagATCTCTGCTCATCATAATGAGTCGGACAAATTACCTAGAGGTGGCCTTGAT