Sequence
atgc intronic sequence ATGC exonic sequenceAGTAAAAAAGGTGGTTTAGCTGCATGGGAGCTTGCAGGAGCTCAAGAGTGGTTAGAAgtaagtattacattaattaataatgcaatatgtatgtactcataaaatgataaaaaatagtacttgtttgataaactaattaactttgttgttgattctcag
Basic information
species | Glycine max |
transcript | GLYMA08G24160.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G24160.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv09s0054g01360.t01 (Vitis vinifera), 5'ss of exon 10
AGTAAAAAAGGTGGTTTAGCTGCATGGGAGCTTGCAGGAGCTCAAGAGTGGTTAGAAgtaagt-att---acattaattaataa-tgcaatatgtatgtact-----cataaaatgataaaaaatagtacttgtttgata-aactaattaactttgttgttgattctcag
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AGTAAAAATGGTGGTTTAGCTGCCTGGGAGCCTGCAGGAGCTTCAGAATGGTTGGAGgtaaattacttcaacatgtttaagtaacttcaatatttctgcattatctctctctctttctaactctttgtgttctttgaatctaaatcaatgccaatctcttctcttttcag
upper sequence: GLYMA08G24160.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv09s0054g01410.t01 (Vitis vinifera), 5'ss of exon 12
AGTAAAAAAGGTGGTTTAGCTGCATGGGAGCTTGCAGGAGCTCAAGAGTGGTTAGAAgtaagt-att---acattaattaataa-tgcaatatgtatgtact-----cataaaatgataaaaaatagtacttgtttgata-aactaattaactttgttgttgattctcag
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AGTAAAAATGGTGGTTTAGCTGCCTGGGAGCCTGCAGGAGCTTCAAAATGGTTGGAGgtaaattacttcaacatgtttaagtaacttcaatatttttgcattatctctctttctttctcactctctgtgttctttgaatctaaatcaatgccaatctcttctcttttcag
upper sequence: GLYMA08G24160.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv09s0054g01280.t01 (Vitis vinifera), 5'ss of exon 9
AGTAAAAAAGGTGGTTTAGCTGCATGGGAGCTTGCAGGAGCTCAAGAGTGGTTAGAAgtaagt-att---acattaattaataa-tgcaatatgtatgta----ctca-taaaatgataaaaaatagtacttgtttgata-aactaattaactttgttgttgattctcag
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AGTAAAAATGGTGGTTTAGCTGCCTGGGAGCCTGTAGGAGCTTCAGAATGGTTGGAGgtaaattacttcaacatgtttaagtaacttcaatatttctgcattatctcactctctttctaactctttgtattctttgaatctaaatcaatgccaatctcttctcttttcag
upper sequence: GLYMA08G24160.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv09s0054g01220.t01 (Vitis vinifera), 5'ss of exon 12
AGTAAAAAAGGTGGTTTAGCTGCATGGGAGCTTGCAGGAGCTCAAGAGTGGTTAGAAgtaagt-attacattaattaataatgcaatatgtatgtactcataaaatgataaaaaata-gtacttgtttgataaact--aattaactttgttgttgat--tctcag
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AGTAAAAATGGTGGTTTAGCAGCTTGGGAGCCTGCAGGAGCTTCAGAATGGTTGGAGgtaatttacttcaacatgttttaa-gcaacttcaatgttgctgcacactctctctctctatatatatgttctttgaatctaaatcaatgccaattcttatcttttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|209716122|gb|BW662320.1|BW662320EST: AAGGTGGTTTAGCTGCATGGGAGCTTGCAGGAGCTCAAGAGTGGTTAGAA TTACTCAATCC
genomic: AAGGTGGTTTAGCTGCATGGGAGCTTGCAGGAGCTCAAGAGTGGTTAGAAgtaagtatta ... tgattctcagTTACTCAATCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGTAAAAAAGGTGGTTTAGCTGCATGGGAGCTTGCAGGAGCTCAAGAGTGGTTAGAAgtaagtattacattaattaataatgcaatatgtatgtactcataaaatgataaaaaatagtacttgtttgataaactaattaactttgttgttgattctcag
- - - - - - - - AGCTGC
- - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - AGCTCA