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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTTACAGAAACTGTTATGTTGTGGCTTTCAGAAGACCAGAGCTTTTGGGATGATATTGAGGAAGGGCCAAGGCCTTTAGGTCCCCTTGGTCTTCAACAGgtatgatattggaatttgtttattatatcattcatgattttcttttaattttggttactggtaactgttataaacccatatgccaaaatagagaagaattgatgcaaattttccacggttgaaccttgtgaaatgcaaagttcattatggccttataattttttcttatattgtgcag

Basic information

species Glycine max
transcript GLYMA08G23840.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G23840.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os03g58970.2 (Oryza sativa), 5'ss of exon 4
ACTTACAGAAACTGTTATGTTGTGGCTTTCAGAAGACCAGAGCTTTTGGGATGATATTGAGGAAGGGCCAAGGCCTTTAGGTCCCCTTGGTCTTCAACAGgtatgatattggaatttgtttattatatcattcatgattttcttttaattttggttactggtaactgttataaacccatatgccaaaatagagaagaattgatgcaaattttccacggttgaaccttgtgaaatgcaaagttcattatggccttataattttttcttatattgtgcag
 ||||||||||| || ||  ||||||| ||||| ||||||||||||||||| || ||||| || ||||||||| || | ||||||||||| ||||| |||||  | | ||    ||| ||  ||  ||| |     |    || ||| | ||  || |   |  || ||                                                                                                             
GCTTACAGAAACAGTCATACTGTGGCTATCAGAGGACCAGAGCTTTTGGGAAGAGATTGAAGAGGGGCCAAGGGCTCTGGGTCCCCTTGGACTTCAGCAGgtgagttctttt--tttcttgttttgatcttatgacaccaactattattcttattttcaccttccttttcag----------------------------------------------------------------------------------------------------------

upper sequence: GLYMA08G23840.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G105652_T01 (Zea mays), 5'ss of exon 4
ACTTACAGAAACTGTTATGTTGTGGCTTTCAGAAGACCAGAGCTTTTGGGATGATATTGAGGAAGGGCCAAGGCCTTTAGGTCCCCTTGGTCTTCAACAGgtatgat-attggaatttgtttattatatcattcatgattttcttttaattttggttactggtaactgttataaacccatatgccaaaatagagaagaattgatgcaaattttccacggttgaaccttgtgaaatgcaaagttcattatggccttataattttttcttatattgtgcag
 || || || || || ||  ||||||| ||||||||||||  ||||||||| || |||||  ||||  ||| ||||||||| ||||| ||||| ||||||||| | | |||      | ||| |  | || ||  |       | ||| ||||    | |   |    ||  |                                                                                                          
CCTCACTGAGACAGTCATACTGTGGCTCTCAGAAGACCAGGCCTTTTGGGAAGAGATTGAACAAGGAGCAAAGCCTTTAGGCCCCCTAGGTCTGCAACAGgtaaggtcatttccccctttttttactttctttgcttcccaagtgttatttttcaaaaatttcattctttgcag---------------------------------------------------------------------------------------------------------

upper sequence: GLYMA08G23840.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G090573_T01 (Zea mays), 5'ss of exon 5
ACTTACAGAAACTGTTATGTTGTGGCTTTCAGAAGACCAGAGCTTTTGGGATGATATTGAGGAAGGGCCAAGGCCTTTAGGTCCCCTTGGTCTTCAACAGgtatgatattggaatttgtttattatatcattcatgattttcttttaattttggttactggtaactgttataaacccatatgccaaaatagagaagaattgat--gcaaattttccacggttgaaccttgtgaaatgcaaagttcattatggccttataattttttcttatattg---tgcag
|||||| ||  | || ||| | ||||| ||||| ||||||||||||||||| ||  |||| ||||| |||||| || | |||||  |||| ||||| ||||||  || |     |     | ||| ||||       |   |   |  | ||    | || |  |  || |||        ||     |      |  ||  |   ||   ||||     |  || | |   |          | |     | | |    ||||   ||   ||    | |||
ACTTACGGAGGCAGTCATGCTTTGGCTCTCAGACGACCAGAGCTTTTGGGAAGAGGTTGAAGAAGGACCAAGGGCTCTGGGTCCGGTTGGACTTCAGCAGgta--atctcattttaaaccttttagatcagaggcattcacccggttttattaaggaatgctctccattttaacttgtcgcgcgcgtgtgtgtgcgtgtttgtttccagcatttcagttttcaaaacctcccaggccttcgcctgacagctgacattcccttttactttgccttcctttccag

upper sequence: GLYMA08G23840.1 (Glycine max), 5'ss of exon 6
lower sequence: AT5G49830.1 (Arabidopsis thaliana), 5'ss of exon 5
ACTTACAGAAACTGTTATGTTGTGGCTTTCAGAAGACCAGAGCTTTTGGGATGATATTGAGGAAGGGCCAAGGCCTTTAGGTCCCCTTGGTCTTCAACAGgtatg-atattggaatttgtttattatatcattcatgattttcttttaattttggttactggtaactgttataaacccatatgccaaaatagagaagaattgatgcaaattttccacggttgaaccttgtgaaatgcaaagttcattatggccttataattttttcttatattgtgcag
| | ||||| ||||| || || |||||||| | ||||||||||||||||||||| ||||||||||| ||  | ||||| || || ||||| || |  ||||| || | | |     ||| ||  | |||        || |   || |     |   |  |  || |||| |  |||  | |    ||| |      |  ||   ||                                                                        
ATTAACAGAGACTGTGATCTTATGGCTTTCTGGAGACCAGAGCTTTTGGGATGACATTGAGGAAGGTCCTCGACCTTTGGGACCTCTTGGCCTACGGCAGgtttgtacactcattcttgctt-ctgtat--------atgtatattcag---cgagcatcga-aattgttgtgtacctttgttaacaaacaacctgcatctgtcacag-----------------------------------------------------------------------

upper sequence: GLYMA08G23840.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv09s0018g01920.t01 (Vitis vinifera), 5'ss of exon 5
ACTTACAGAAACTGTTATGTTGTGGCTTTCAGAAGACCAGAGCTTTTGGGATGATATTGAGGAAGGGCCAAGGCCTTTAGGTCCCCTTGGTCTTCAACAGgtatgatattggaatttgtttattatatcattcatgattttcttttaattttggttactggtaactgttataa-acccatatgccaaaata-gagaagaattgatgcaaattttccacggttgaaccttgtgaaatgcaaagttcattatggccttataattttttcttatattgtgcag
||| || |||||||| ||  | |||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |    ||| ||||  |      |    | |||  |  ||| ||  | | |  | |    |||||   ||| |  ||  ||| |||  | | | ||                                                                                  
ACTCACTGAAACTGTCATTATATGGCTTTCTGAAGACCAAAGCTTTTGGGATGATATTGAGGAAGGGCCGAGGCCTTTAGGTCCTCTTGGTCTTCAACAGgttt----ttgaaattgatccccattgatctgcatc-tgctctgtttctgtcgagttcctaaaactgacctaatattcacttgctaaatcatgtgtag----------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21888131|gb|BQ741344.1|BQ741344
EST:     ATGATATTGAGGAAGGGCCAAGGCCTTTAGGTCCCCTTGGTCTTCAACAG                         CTCTATTTAGATATGAAGTTTGTCGTATGTTTTGCCTCCCATGGTCGGTAC
genomic: ATGATATTGAGGAAGGGCCAAGGCCTTTAGGTCCCCTTGGTCTTCAACAGgtatgatatt ... tattgtgcagTTCTATTTAGATATGAAGTTTGTCGTATGTTTTGCCTCCCATGGTCGGTAC