Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCAAATCTTAAGAGTGTGAGAGAACTTATTTACAAGAGAGGGTATGGAAAGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAGgtattgttaatttacaattctgtattacaaatttgaattaattcactacatgcttctgacttgcttggatgacag

Basic information

species Glycine max
transcript GLYMA08G23750.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G23750.2 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G094051_T05 (Zea mays), 5'ss of exon 5
CCCAAATCTTAAGAGTGTGAGAGAACTTATTTACAAGAGAGGGTATGGAAAGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAGgtattgttaatttacaattctgtattacaaatttgaattaattcactacatgcttctgacttgcttggatgacag----------------------
||||||  | |||||||| || ||  | || |||||||| || ||||||||||| |||||||||||||   ||||  |  |||||    |||| ||| |||| |||| || ||  || |||  ||        ||  ||   |   || |||      | || | || ||||                         
CCCAAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTATGGAAAGCTGAACAAGCAGAGGATCCCTCTGTCCAACAACCAAGTCATCGAGGAGgt-ttgtaaacttggaactctacatctggttcctgtgttctgtttatatatgac---aatttacatg-atgatctccaccttttggtgttctatcag

upper sequence: GLYMA08G23750.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv09s0054g00010.t01 (Vitis vinifera), 5'ss of exon 5
CCCAAATCTTAAGAGTGTGAGAGAACTTATTTACAAGAGAGGGTATGGAAAGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAGgtatt---gttaatttacaattctgtattacaaatttgaattaattcactacat---gcttctgacttgcttggatgacag---
||| ||| | ||||||||| ||||| | ||||||||||| |||||||||||| | ||||||||||| |||||  | || |||||||||||  | || ||||| ||   || | | |  |  |  || ||  |     ||  |  ||  ||| ||   | | || || |||||   |||      
CCCCAATTTGAAGAGTGTGCGAGAATTGATTTACAAGAGGGGGTATGGAAAGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgtttttatgtcattctgtatcttggttttctatgagcga--ttgtttgctatatcttgttgctaacctgcttttgtgatgatag

upper sequence: GLYMA08G23750.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv09s0054g00030.t01 (Vitis vinifera), 5'ss of exon 5
CCCAAATCTTAAGAGTGTGAGAGAACTTATTTACAAGAGAGGGTATGGAAAGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAGgtatt---gttaatttacaattctgtattacaaatttgaattaattcactacat---gcttctgacttgcttggatgacag---------------------
||| ||| | ||||||||| ||||| | ||||||||||| ||||| |||||| | ||||||||||| |||||  | || |||||||||||  | || ||||| ||   || | | |  |  |  || ||  |    |||  |  ||  ||| ||   | | || || | |||   |||                        
CCCCAATTTGAAGAGTGTGCGAGAATTGATTTACAAGAGGGGGTACGGAAAGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgtttttatgtcattctgtatcttggttttctatgagtga--ttgtttgctatatcttgttgctaacctacttttgtgatgataggctttggggaagtttggt

upper sequence: GLYMA08G23750.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv11s0052g00290.t01 (Vitis vinifera), 5'ss of exon 6
CCCAAATCTTAAGAGTGTGAGAGAACTTATTTACAAGAGAGGGTATGGAAAGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAGgtatt------gttaatttacaattctgtatt--acaaatttgaattaattcactacatgcttctgacttgcttgg--atgacag
 || ||| | |||||||| || ||||| ||||||||||| || |||||||| || ||||||||||| |||||||| ||||| ||||| |||||||| ||||| |       ||||| | ||| || | | ||  |   |||   || || |  ||      |      ||| |  |  ||  |||
TCCCAATTTAAAGAGTGTCAGGGAACTGATTTACAAGAGGGGTTATGGAAAACTTAACAAGCAGAGAACTGCTCTGACTGATAACTCAATCATTGAACAGgtttgttgtaggttaaataacatttatatgttcgatgtattgctataaactggcttttcaatgacattttggtatgttattgcag

upper sequence: GLYMA08G23750.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv09s0054g00140.t01 (Vitis vinifera), 5'ss of exon 4
CCCAAATCTTAAGAGTGTGAGAGAACTTATTTACAAGAGAGGGTATGGAAAGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAGgtatt---gttaatttacaattctgtattacaaatttgaattaattcacta-catgcttctgacttgcttggatgacag---
||| ||| | ||||||||| ||||| | ||||||||||| |||||||||||| | ||||||||||| |||||  | || |||||||||||  | || ||||| ||   || | | |  |  |  || ||  |     || |   | |  || | || | || || |||||   |||      
CCCCAATTTGAAGAGTGTGCGAGAATTGATTTACAAGAGGGGGTATGGAAAGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgtttttatgtcattctgtatcttggttttctatgagcgattgtttgctttatcttgttgctaacctgcttttgtgatgatag

upper sequence: GLYMA08G23750.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv09s0054g00090.t01 (Vitis vinifera), 5'ss of exon 4
CCCAAATCTTAAGAGTGTGAGAGAACTTATTTACAAGAGAGGGTATGGAAAGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAGgtattgttaatttacaattctgtattacaaatttgaattaattcactacat---gcttctgacttgcttggatgacag---
||| ||| | ||||||||| ||||||| ||||||||||| || ||||||||| | ||||||||||| |||||  | || |||||||||||  | || ||||| ||  |    |  |  |  || ||     |  |   |  ||  ||| ||   | | || || |||||   |||      
CCCCAATTTGAAGAGTGTGCGAGAACTGATTTACAAGAGGGGCTATGGAAAGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgtttttatgtcctgtatcttggttttttt--tgagggattgtttgctatatcttgttgctaacctgcttttgtgatgatag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18040443|gb|BM308737.1|BM308737
EST:     AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAG                         GCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAGgtattgttaa ... tggatgacagGCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
EST: gi|254325882|gb|GR838763.1|GR838763
EST:     AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAG                         GCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAGgtattgttaa ... tggatgacagGCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
EST: gi|213602417|gb|DB982064.1|DB982064
EST:     TAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAG                         GCGCTGGGCAAATATGGGATCATTTCGACTGAAGATCTGATCCATGAGATC
genomic: TAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAGgtattgttaa ... tggatgacagGCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
EST: gi|26046005|gb|CA783377.1|CA783377
EST:     AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAG                         GCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAGgtattgttaa ... tggatgacagGCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
EST: gi|254347507|gb|GR853756.1|GR853756
EST:     AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAG                         GCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAGgtattgttaa ... tggatgacagGCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
EST: gi|22524163|gb|BU082974.1|BU082974
EST:     AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAG                         GCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAGgtattgttaa ... tggatgacagGCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
EST: gi|151408828|gb|EV278636.1|EV278636
EST:     AGCTAAACAGGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAG                         GCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAGgtattgttaa ... tggatgacagGCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
EST: gi|213600867|gb|DB968831.1|DB968831
EST:     AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAG                         GCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAGgtattgttaa ... tggatgacagGCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
EST: gi|18733245|gb|BM527500.1|BM527500
EST:     AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAG                         GCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAGgtattgttaa ... tggatgacagGCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
EST: gi|6952066|gb|AW424134.1|AW424134
EST:     AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAG                         GCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAGgtattgttaa ... tggatgacagGCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
EST: gi|192299043|gb|FG992834.1|FG992834
EST:     AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAG                         GCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAGgtattgttaa ... tggatgacagGCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
EST: gi|254325881|gb|GR838762.1|GR838762
EST:     AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAG                         GCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAGgtattgttaa ... tggatgacagGCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
EST: gi|21602015|gb|BQ612346.1|BQ612346
EST:     AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAG                         GCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAGgtattgttaa ... tggatgacagGCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
EST: gi|193453230|gb|FK419482.1|FK419482
EST:     AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAG                         GCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAGgtattgttaa ... tggatgacagGCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
EST: gi|23727299|gb|BU761679.1|BU761679
EST:     AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAG                         GCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAGgtattgttaa ... tggatgacagGCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
EST: gi|20814466|gb|BQ298944.1|BQ298944
EST:     AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAG                         GCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAGgtattgttaa ... tggatgacagGCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
EST: gi|209705405|gb|BW678522.1|BW678522
EST:     AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAG                         GCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAGgtattgttaa ... tggatgacagGCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
EST: gi|6481697|gb|AW200968.1|AW200968
EST:     AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAG                         GCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAGgtattgttaa ... tggatgacagGCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
EST: gi|213608473|gb|DB974730.1|DB974730
EST:     AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAG                         GCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAGgtattgttaa ... tggatgacagGCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
EST: gi|151404152|gb|EV273962.1|EV273962
EST:     AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAG                         GCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAGgtattgttaa ... tggatgacagGCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
EST: gi|192294789|gb|FG987478.1|FG987478
EST:     AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAG                         GCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAGgtattgttaa ... tggatgacagGCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
EST: gi|208059760|gb|GD858658.1|GD858658
EST:     AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAG                         GCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAGgtattgttaa ... tggatgacagGCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
EST: gi|11689677|gb|BF597353.1|BF597353
EST:     AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAG                         GCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAGgtattgttaa ... tggatgacagGCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
EST: gi|15285859|gb|BI469750.1|BI469750
EST:     AGCTAAACAAGCAGAGGACTGCTCTAACTGACCACTCCATCATTGAGCAG                         GCGCTGGGCAAATATGGAATC
genomic: AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAGgtattgttaa ... tggatgacagGCGCTGGGCAAATATGGAATC
EST: gi|192294006|gb|FG987175.1|FG987175
EST:     AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCTG                         GCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATTCATGAGATC
genomic: AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAGgtattgttaa ... tggatgacagGCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
EST: gi|8402790|gb|BE058424.1|BE058424
EST:     AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAG                         GCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAGgtattgttaa ... tggatgacagGCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
EST: gi|209700311|gb|BW664537.1|BW664537
EST:     AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAG                         GCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAGgtattgttaa ... tggatgacagGCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
EST: gi|151407554|gb|EV277369.1|EV277369
EST:     AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAG                         GCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAGgtattgttaa ... tggatgacagGCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
EST: gi|209705305|gb|BW667976.1|BW667976
EST:     AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAG                         GCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAGgtattgttaa ... tggatgacagGCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
EST: gi|192298153|gb|FG991673.1|FG991673
EST:     AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAG                         GCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAGgtattgttaa ... tggatgacagGCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
EST: gi|18040444|gb|BM308738.1|BM308738
EST:     AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAG                         GCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAGgtattgttaa ... tggatgacagGCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
EST: gi|18039795|gb|BM308097.1|BM308097
EST:     AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAG                         GCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAGgtattgttaa ... tggatgacagGCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
EST: gi|17964115|gb|BM270855.1|BM270855
EST:     AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAG                         GCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAGgtattgttaa ... tggatgacagGCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
EST: gi|192298498|gb|FG988484.1|FG988484
EST:     AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAG                         GCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATC
genomic: AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAGgtattgttaa ... tggatgacagGCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATC
EST: gi|18041158|gb|BM309461.1|BM309461
EST:     AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAG                         GCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAGgtattgttaa ... tggatgacagGCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
EST: gi|9985058|gb|BE659166.1|BE659166
EST:     AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAG                         GCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAGgtattgttaa ... tggatgacagGCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
EST: gi|58016222|gb|CX702964.1|CX702964
EST:     AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAG                         GCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAGgtattgttaa ... tggatgacagGCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
EST: gi|192296243|gb|FG991569.1|FG991569
EST:     AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAG                         GCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAGgtattgttaa ... tggatgacagGCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
EST: gi|10845839|gb|BF068880.1|BF068880
EST:     AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTNCATCATTGAGCAG                         GCGCTGGGCAAATATGGAATCATT
genomic: AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAGgtattgttaa ... tggatgacagGCGCTGGGCAAATATGGAATCATT
EST: gi|208151334|gb|GD946437.1|GD946437
EST:     AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAG                         GCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAGgtattgttaa ... tggatgacagGCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
EST: gi|207754899|gb|GD726904.1|GD726904
EST:     AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAG                         GCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAGgtattgttaa ... tggatgacagGCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
EST: gi|26058987|gb|CA801901.1|CA801901
EST:     AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAG                         GCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAGgtattgttaa ... tggatgacagGCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
EST: gi|209705404|gb|BW678521.1|BW678521
EST:     AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAG                         GCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGA
genomic: AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAGgtattgttaa ... tggatgacagGCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGA
EST: gi|31460747|gb|CD402775.1|CD402775
EST:     AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAG                         GCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAGgtattgttaa ... tggatgacagGCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
EST: gi|9564858|gb|BE474367.1|BE474367
EST:     AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAN                         GCGCTGGGCAAATATGGAATCATT
genomic: AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAGgtattgttaa ... tggatgacagGCGCTGGGCAAATATGGAATCATT
EST: gi|19052881|gb|BM731548.1|BM731548
EST:     AGCTAAACAAGCAGAGGACTGCTCTAAAAGACAACTCCATCATTGAGCAG                         GCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAGgtattgttaa ... tggatgacagGCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
EST: gi|6455402|gb|AW186085.1|AW186085
EST:     ACTGCTCTAACTGACAACTCCATCATTGAGCAG                         GCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
genomic: ACTGCTCTAACTGACAACTCCATCATTGAGCAGgtattgttaa ... tggatgacagGCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
EST: gi|21594106|gb|BQ610054.1|BQ610054
EST:     AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAG                         GCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAGgtattgttaa ... tggatgacagGCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCCAAATCTTAAGAGTGTGAGAGAACTTATTTACAAGAGAGGGTATGGAAAGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAGgtattgttaatttacaattctgtattacaaatttgaattaattcactacatgcttctgacttgcttggatgacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG