Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTTCATTTACAAATGGAGTAGACTGGGATGGTCCATATAGACTACAATTTCAAGTTCCCAAGGCATTACAGAACAAGCCAATTGACTTCTTTAATAAGgtaaatagctagccacactatttctctctgaatcaagtgactctagcttaatgcacaggtcatcctagctttataatcaaactctcaatctttcttttga...

Basic information

species Glycine max
transcript GLYMA08G22740.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G22740.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv09s0002g06980.t01 (Vitis vinifera), 5'ss of exon 6
CTTTTCATTTACAAATGGAGTAGACTGGGATGGTCCATATAGACTACAATTTCAAGTTCCCAAGGCATTACAGAACAAGCCAATTGACTTCTTTAATAAGgtaaatagctagccacactatttctctctgaatcaagtgactctagcttaatgcacag-gtcatcctagctttataatcaaactctcaatctttcttttga--------
||| ||||| ||||| |||   || ||||||||||| || | ||| || ||||||||||||||||| |  |  ||||| |||||||| ||||||||| ||||||          | | || |  ||| | |||  || || |        || ||  | |  ||    |   | |   || | |  |||||  |||   ||        
CTTCTCATTCACAAACGGAACTGAGTGGGATGGTCCCTACAAACTGCAGTTTCAAGTTCCCAAGGCTTGGCGAAACAAACCAATTGAATTCTTTAATCAGgtaa---------taaaatactcttctttcaattcagagaattgtttgccatacattgtgatatttgtggactgtttgcagattgccaatcaatctcaagattaattaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9984428|gb|BE658536.1|BE658536
EST:     TTCAAGTTCCCAAGGCATTACAGAACAAGCCAATTGACTTCTTTAATAAG                         GGCTTGGCGGAGGAACTGAGTAAAGAAGGAGCATGCGAGCAAGCAATATTT
genomic: TTCAAGTTCCCAAGGCATTACAGAACAAGCCAATTGACTTCTTTAATAAGgtaaatagct ... tctgtggtagGGCTTGGCGGAGGAACTGAGTAAAGAAGGAGCATGCGAGCAAGCAATATTT
EST: gi|192314804|gb|FK006016.1|FK006016
EST:     TTCAAGTTCCCAAGGCATTACAGAACAAGCCAATTGACTTCTTTAATAAG                         GGCTTGGCGGAGGAACTGAGTAAAGAAGGAGCATGCGAGCAAGCAATATTT
genomic: TTCAAGTTCCCAAGGCATTACAGAACAAGCCAATTGACTTCTTTAATAAGgtaaatagct ... tctgtggtagGGCTTGGCGGAGGAACTGAGTAAAGAAGGAGCATGCGAGCAAGCAATATTT
EST: gi|17519754|gb|BM188796.1|BM188796
EST:     TTCAAGTTCCCAAGGCATTACAGAACAAGCCAATTGACTTCTTTAATAAG                         GGCTTGGCGGAGGAACTGAGTAAAGAAGGAGCATGCGAGCAAGCAATATTT
genomic: TTCAAGTTCCCAAGGCATTACAGAACAAGCCAATTGACTTCTTTAATAAGgtaaatagct ... tctgtggtagGGCTTGGCGGAGGAACTGAGTAAAGAAGGAGCATGCGAGCAAGCAATATTT
EST: gi|213596677|gb|DB977993.1|DB977993
EST:     TTCAAGTTCCCAAGGCATTACAGAACAAGCCAATTGACTTCTTTAATAAG                         GGCTTGGCGGAGGAACTGAGTAAAGAAGGAGCATGCGAGCAAGCAATATTT
genomic: TTCAAGTTCCCAAGGCATTACAGAACAAGCCAATTGACTTCTTTAATAAGgtaaatagct ... tctgtggtagGGCTTGGCGGAGGAACTGAGTAAAGAAGGAGCATGCGAGCAAGCAATATTT