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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAGCAGTTGAAATTTTGGAAGCATATGAAGGGACTTTGGAAGAGGATCATCCTCCAGAAAATGAACGGTGTGAGCATGGGGAAATGCTTTTATACAAGgttttcctctggcagtgtgtttgctgctgttactttttttaatgcatgatgcttattcagatatttggtgcttcatgtaacttttaccgtaattagcttt...

Basic information

species Glycine max
transcript GLYMA08G22180.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G22180.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv09s0002g05110.t01 (Vitis vinifera), 5'ss of exon 6
CAAAGCAGTTGAAATTTTGGAAGCATATGAAGGGACTTTGGAAGAGGATCATCCTCCAGAAAATGAACGGTGTGAGCATGGGGAAATGCTTTTATACAAGgttttcctctggcagtgtgtttgctgctgttactttttttaat-gcatgatgcttattcagatatttggtgctt-catgtaacttttaccgtaattagcttt
 |||||| |||||||  | ||||||||||||||||| || ||||| ||| ||||||||||||||||||| || |||||||||||||||||||||||||||||  |    | |  |||   |   |    || |  || | | |   |  ||||||       | |||  |  |   ||| |  | ||   |||  |||    
AAAAGCAATTGAAATCCTTGAAGCATATGAAGGGACATTAGAAGATGATTATCCTCCAGAAAATGAACGCTGCGAGCATGGGGAAATGCTTTTATACAAGgtaattgctttgacgtgcagtgcatatatttgcacttctcattcagactatgcttgggagtttttttaatagtgatatgcatttgttgttgta--tag----

upper sequence: GLYMA08G22180.1 (Glycine max), 5'ss of exon 6
lower sequence: PP1S201_47V6.1 (Physcomitrella patens), 5'ss of exon 6
CAAAGCAGTTGAAATTTTGGAAGCATATGAAGGGACTTTGGAAGAGGATCATCCTCCAGAAAATGAACGGTGTGAGCATGGGGAAATGCTTTTATACAAGgtttt----cctctggcagtgtgtttgctgctgttacttt--ttttaatgcatgatgcttattcagatattt--ggtgcttcatgtaacttttaccgtaattagcttt
 |  || ||  | || ||||| ||||||||||| |||||||||||||||  |||||| |||| ||| |||| ||||||  | ||||||||  | || |||||  |      |  ||  ||     || |   |    |    | || |||   ||     || ||   ||||  | ||  | |   | ||||     |||        
GATGGCTGTAAATATATTGGATGCATATGAAGGAACTTTGGAAGAGGATTTTCCTCCTGAAAGTGAGCGGTATGAGCACAGTGAAATGCTCCTTTATAAGgtaatgaggtttacggacgtcccagtggtatagacgttacagtgttgatgttggaaaaacatccaagcattttagatgtcttagacagctttgcttttaa--------