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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAGATATTTGAGGGACATTCTCATTATGTCATGCAAGTGACATTTAATCCTAAAGACACAAACACCTTTGCCAGTGCATCTCTTGATCGCACCATAAAGgtatatacatgtgttcttctcgctagttgtgtcctgaattttctttgtttatttccatacatctatgataaaaatttaaaagtaatgtattaatgttatcttcaattgcag

Basic information

species Glycine max
transcript GLYMA08G22140.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G22140.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os02g11830.2 (Oryza sativa), 5'ss of exon 6
CCAGATATTTGAGGGACATTCTCATTATGTCATGCAAGTGACATTTAATCCTAAAGACACAAACACCTTTGCCAGTGCATCTCTTGATCGCACCATAAAGgtatatacatgtgttcttctcgctagttgtgtcctgaattttctttgtttatttccatacatctatgataaaaatttaaaagtaatgtattaatgttatcttcaattgcag
 || || || ||||| |||||||| ||||| |||||||| |||||||| || ||||| || || || ||||| ||||| || |||||||||||  ||||||| |     | ||||| |  |  |     ||    | ||  | ||||   ||||| |    |   || |    |||| || ||  ||   | || |||  ||||       
TCAAATCTTCGAGGGGCATTCTCACTATGTTATGCAAGTCACATTTAACCCGAAAGATACCAATACTTTTGCTAGTGCTTCACTTGATCGCACAGTAAAGgtttgcgattttgttccttacatt-----tgcttggcatagtttttgc--atttctaacatttcttggtctggatttgaatgtggtgcccttat-ttaatttcag------

upper sequence: GLYMA08G22140.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os06g05180.2 (Oryza sativa), 5'ss of exon 6
CCAGATATTTGAGGGACATTCTCATTATGTCATGCAAGTGACATTTAATCCTAAAGACACAAACACCTTTGCCAGTGCATCTCTTGATCGCACCATAAAGgtatatacatgtgttcttctcgctagttgtgtcctgaattttctttgtttatttccatacatctatgataaaaatttaaaagtaatgtattaatgttatcttcaattgcag
 || || |||||||||||||| || || || |||||||| || || ||||| || || || ||||| ||||| |||||||||||||| || || | |||||| | |        |||         || ||   || || || ||     || |       | |||||    | ||    | |||||  |  |    | ||  ||   |||
TCAAATCTTTGAGGGACATTCACACTACGTGATGCAAGTTACTTTCAATCCAAAGGATACTAACACTTTTGCAAGTGCATCTCTTGACCGAACTACAAAGgtctgttt-cacaatctc--------ttatgcagtggatgttattcaca-atatatggctttttatgaggtgatttgtgcactaatggttctaa---aactgaaacaacag

upper sequence: GLYMA08G22140.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G124886_T04 (Zea mays), 5'ss of exon 6
CCAGATATTTGAGGGACATTCTCATTATGTCATGCAAGTGACATTTAATCCTAAAGACACAAACACCTTTGCCAGTGCATCTCTTGATCGCACCATAAAGgtatatacatgtgttcttctcgctagttgtg-----tcctgaattttctttgtttatttccatacatctatga-----taaaaatttaaaagtaatgtattaatgttatcttcaattgcag
 || |||||||| || |||||||| ||||| |||||||| |||||||| || ||||| |||||||||||||| ||||| || || |||||||| |||||||| | |   | | | |   |    | || ||      |   |  || | || |||  | ||      | |        | | |  || |  || || |  || | ||    |||||  |||
TCAAATATTTGAAGGGCATTCTCACTATGTGATGCAAGTTACATTTAACCCAAAAGATACAAACACCTTTGCTAGTGCTTCCCTGGATCGCACAATAAAGgtttgtgt-tatctccgctttaaaaattctggttggccacaatgttgcattatttggtaccgacaggcgacagctttttcatagcttgatggtgatatcctattttt--tgtcaatatcag

upper sequence: GLYMA08G22140.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G443953_T01 (Zea mays), 5'ss of exon 7
CCAGATATTTGAGGGACATTCTCATTATGTCATGCAAGTGACATTTAATCCTAAAGACACAAACACCTTTGCCAGTGCATCTCTTGATCGCACCATAAAGgtatatacatgtgttcttctcgctagttgtgtcctgaattttctttgtttatttccatacatctatgataaaaatttaaaagtaatgtattaatgttatcttcaattgcag-
 || || |||||||| || ||||| |||||||||||||| |||||||| || ||||||||||| || ||||| ||||| ||||||||||| ||  ||||||||||  ||| |||| |  |   |  |  ||        ||  ||| |   |||||     ||| || ||    || |  || ||| |  |    |||  |  |||| |   
TCAAATTTTTGAGGGCCACTCTCACTATGTCATGCAAGTCACATTTAACCCCAAAGACACAAATACTTTTGCTAGTGCTTCTCTTGATCGTACTGTAAAGgtatacccatatgttttattttgttttaatgataatgtattaatttctcgttttcc-----tctttgctagcc-ttaacgagcaattttct----ttacttgaaatttctag

upper sequence: GLYMA08G22140.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G141587_T01 (Zea mays), 5'ss of exon 6
CCAGATATTTGAGGGACATTCTCATTATGTCATGCAAGTGACATTTAATCCTAAAGACACAAACACCTTTGCCAGTGCATCTCTTGATCGCACCATAAAGgtatatacatgtgttcttctcg-----ctagttgtgtcctgaattttctttgtttatttccatacatctatgataaaaatttaaaagtaatgtattaatgttatcttcaattgcag
 || ||||| || || |||||||| ||||| |||||||| |||||||| || ||||| || ||||||||||| ||||| || || |||||||| |||||||| | |  |     |  | |       || |||| |||   |  ||   || ||| |   |||     | |  | | | ||| |  || || |  |||| || | |  |   |   
TCAAATATTCGAAGGGCATTCTCACTATGTGATGCAAGTTACATTTAACCCAAAAGATACCAACACCTTTGCTAGTGCTTCCCTGGATCGCACAATAAAGgtttgtgtaatctctgctttaaaagttctggttg-gtcacaatgttgtattatttgtcgtcattagctttt--tcatagtttgatggtgatatcctaat-ttctgtctatcag---

upper sequence: GLYMA08G22140.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G000645_T03 (Zea mays), 5'ss of exon 6
CCAGATATTTGAGGGACATTCTCATTATGTCATGCAAGTGACATTTAATCCTAAAGACACAAACACCTTTGCCAGTGCATCTCTTGATCGCACCATAAAGgtatatacatgtgttcttctcgctagttgtgtcctgaattttctttgtttatttccatacatctatgataaaaatttaaaagtaatgtattaatgttatcttcaattgcag
 || ||||||||||||||||| || ||||| ||||| || || || ||||| || || |  ||||||||||| |||||||| ||||| ||||| | ||||||||          | ||  |  || || ||    ||  |      ||| | | | |  |||    |||   |  ||     | || |||   | |||  || || |||||
TCAAATATTTGAGGGACATTCACACTATGTGATGCAGGTTACTTTCAATCCAAAGGATATTAACACCTTTGCAAGTGCATCCCTTGACCGCACTACAAAGgtatgc-------ctttttgcaata-ttatgcagcgagat------gttaactgcgactcat----gatgtgatcttgt---tcatttatacttcttactttgaactgcag

upper sequence: GLYMA08G22140.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G419984_T01 (Zea mays), 5'ss of exon 5
CCAGATATTTGAGGGACATTCTCATTATGTCATGCAAGTGACATTTAATCCTAAAGACACAAACACCTTTGCCAGTGCATCTCTTGATCGCACCATAAAGgtatatacatgtgttcttctcgctagttgtgtcctgaattttctttgtttatttccatacatctatgataaaaatttaaaagtaatgtattaatgttatcttcaattgcag
 || |||||| |||||||||| || ||||| ||||| || || || ||||| || || |  ||||||||||| |||||||| ||||| ||||| | ||||||||          | ||  |  || || ||    ||  |      ||| | | | |  |||    |||   |  ||     | || |||   | |||  || || |||||
TCAAATATTTAAGGGACATTCACACTATGTGATGCAGGTTACTTTCAATCCAAAGGATATTAACACCTTTGCAAGTGCATCCCTTGACCGCACTACAAAGgtatgc-------ctttttgcaata-ttatgcagcgagat------gttaactgcgactcat----gatgtgatcttgt---tcatttatacttcttactttgaactgcag

upper sequence: GLYMA08G22140.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G095348_T02 (Zea mays), 5'ss of exon 5
CCAGATATTTGAGGGACATTCTCATTATGTCATGCAAGTGACATTTAATCCTAAAGACACAAACACCTTTGCCAGTGCATCTCTTGATCGCACCATAAAGgtatatacatgtgttcttctcgctagttgtgtcctgaattttctttgtttatttccatacatctatgataaaaatttaaaagtaatgtattaatgtta-tcttcaattgcag
 || || |||||||||||||| || ||||| ||||| || || || || || || || |  ||||| ||||| |||||||||||||||||||| | ||||||             |||  |  || || ||     |  |      |||  || | |   |   | |||   |  ||     | ||  ||   | | | |||  ||||| ||
TCAAATTTTTGAGGGACATTCACACTATGTGATGCAGGTTACTTTCAACCCAAAGGATATTAACACTTTTGCAAGTGCATCTCTTGATCGCACTACAAAGgtgcgc---------cttgacaata-ttatggagcaagat------gttagttgcgactgagtcaagatgtgatcttgt---tcattcatacttctcactctgaaattgtag

upper sequence: GLYMA08G22140.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G52360.1 (Arabidopsis thaliana), 5'ss of exon 6
CCAGATATTTGAGGGACATTCTCATTATGTCATGCAAGTGACATTTAATCCTAAAGACACAAACACCTTTGCCAGTGCATCTCTTGATCGCACCATAAAGgtatatacatgtgttcttctcgctagttgtgtcctgaattttctttgtttatttccatacatctatgataaaaatttaaaagtaatgtattaatgttatcttcaattgcag
 |||||||| |||||||| || || ||||| |||||||| ||||||||||| |||||||| ||||| |||||||||||||| |||||||| |||||||||||    | |||   |    | |  |    |        |||  |  | ||| | |  |   |||| |       |||| | | | |||       | |||||||       
TCAGATATTCGAGGGACACTCACACTATGTGATGCAAGTCACATTTAATCCAAAAGACACCAACACTTTTGCCAGTGCATCCCTTGATCGTACCATAAAGgtgctgaaatggtctaacattg--aaacatcattatggtttagtccgcttagtccgctcattctacg-------tttacatgca-tgt-------tcatcttcag------

upper sequence: GLYMA08G22140.1 (Glycine max), 5'ss of exon 6
lower sequence: AT3G15980.3 (Arabidopsis thaliana), 5'ss of exon 6
CCAGATATTTGAGGGACATTCTCATTATGTCATGCAAGTGACATTTAATCCTAAAGACACAAACACCTTTGCCAGTGCATCTCTTGATCGCACCATAAAGgtatatacatgtgttcttctcgctagttgtgtcctgaattttctttgtttatttccatacatctatgataaaaatttaaaagtaatgtattaatgttatcttcaattgcag
 |||||||||||||||||||| || ||||| |||||||||  ||||||||| ||||| || ||||| ||||||||||| || |||||||| ||||||||||| | ||   | | ||    | ||     | |   |        ||  |||   | |   |  | | | |    |||   ||     | || ||| | | ||||  | |||
TCAGATATTTGAGGGACATTCGCACTATGTGATGCAAGTGGTATTTAATCCAAAAGATACCAACACTTTTGCCAGTGCTTCGCTTGATCGTACCATAAAGgtgtgtaa--gaggtccaagcactgagcttttatgg-------cttagttagcacgaggtacttttaaaagggttttcttagactaattttcatgct-tgttcatattcag

upper sequence: GLYMA08G22140.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 6
CCAGATATTTGAGGGACATTCTCATTATGTCATGCAAGTGACATTTAATCCTAAAGACACAAACACCTTTGCCAGTGCATCTCTTGATCGCACCATAAAGgtat-atacatgtgttcttctcgctagttgtgtcctgaattttctttgtttatttccatacatctatgataaaaatttaaaagtaatgtattaatgttatcttcaattgcag
 ||||| |||||||| || ||||||||||| |||||||||||||||||||| ||||| || ||||| ||||| ||||||||||| ||||||||||| ||||||| ||     | ||||  | || | ||||   ||| ||||| |||    ||||   | |||| |   ||  | | |   | | |||   | ||| ||||| |  || |||
TCAGATCTTTGAGGGCCACTCTCATTATGTGATGCAAGTGACATTTAATCCAAAAGATACCAACACTTTTGCTAGTGCATCTCTGGATCGCACCATTAAGgtatgatctggattttctgttggcaacttgttaactgcatttt-tttaccaattttgcttcatcaa--gtatgagtgtgctatttatgctctgatgatatctccttttccag

upper sequence: GLYMA08G22140.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv11s0016g04180.t01 (Vitis vinifera), 5'ss of exon 6
CCAGATATTTGAGGGACATTCTCATTATGTCATGCAAGTGACATTTAATCCTAAAGACACAAACACCTTTGCCAGTGCATCTCTTGATCGCACCATAAAGgtatatacatgtgttcttctcgctagttgtgtcctgaattttctttgtttatttccatacatctatgataaaaatttaaaagt--aatgtattaatgttatcttcaattgcag
 ||||| ||||| || |||||||| || || |||||||||||||||||||| |||||||| ||||||||||| ||||| || || |||||||| |||||||| |         |  |||| | ||    |||  |||| ||      | | |||| ||      ||| | |   ||  | |||  | | |||| ||  | |            
TCAGATTTTTGAAGGGCATTCTCACTACGTGATGCAAGTGACATTTAATCCAAAAGACACCAACACCTTTGCAAGTGCCTCCCTCGATCGCACTATAAAGgtgtgagtggaaatgtttcttgataacc-tgttgtgaacttgaag-atgtgtttcaatgtcctaatgttgatccttccatagttgattttattgattgtgtg-----------

upper sequence: GLYMA08G22140.1 (Glycine max), 5'ss of exon 6
lower sequence: PP1S79_180V6.2 (Physcomitrella patens), 5'ss of exon 6
CCAGATATTTGAGGGACATTCTCATTATGTCATGCAAGTGACATTTAATCCTAAAGACACAAACACCTTTGCCAGTGCATCTCTTGATCGCACCATAAAGgt-atatacatgt--gttcttctcgctagttgtgtcctgaattttctttgtttatttccatacatctatgataaaaatttaaaag-taatgtattaatgttatcttcaattgcag--------------------------------------------------------------------------------
 || || || || || || |||||||||||||||||||| || |||||||| |||||||  ||||||||||| ||||| ||| | ||||| ||  | ||||| |  |||  ||  ||||       || || | | | | |||  || | || |  |   ||||   || |||    |    | | ||||   || |    || |||||     |                                                                                
TCAAATTTTCGAAGGGCACTCTCATTATGTCATGCAAGTAACGTTTAATCCCAAAGACAGCAACACCTTTGCAAGTGCTTCTTTGGATCGAACTGTGAAGgtgaggtaccagttggttccgtcgtttatttttctgcagtattagctgtcttgaaatat-tacaaa-atcatagggttccttatgctaatagctttaccccatattcaagcaacgaagttcaactgatgtaagattgtcttccaagacaatagaacaaaacgatggcttaattgtatggactgtctttttaacag

upper sequence: GLYMA08G22140.1 (Glycine max), 5'ss of exon 6
lower sequence: PP1S243_63V6.1 (Physcomitrella patens), 5'ss of exon 6
CCAGATATTTGAGGGACATTCTCATTATGTCATGCAAGTGACATTTAATCCTAAAGACACAAACACCTTTGCCAGTGCATCTCTTGATCGCACCATAAAGgtatatacatgtgttcttctcgctagttgtgtcctgaattttctttgtttatttccatacat-ctatgataaaaatttaaaag----taatgtattaatgttatcttcaattgcag--------------------------------------------------------------------
|||||| ||||| ||||||||||||||||||||||||||||| || ||||| |||||||  ||||| ||||| || || ||  | ||||| ||  | |||||       | ||| ||||      | ||| || |  |||  | || | ||  |  | | || |||||| |||||    ||      ||||  | |    || |  |  | |||                                                                      
CCAGATCTTTGAAGGACATTCTCATTATGTCATGCAAGTGACTTTCAATCCCAAAGACAGTAACACTTTTGCAAGCGCTTCCTTGGATCGAACTGTTAAGgtgagatattatgtgcttc------gatgt-tcttctattggcattatgtacgtaaagaaattctatgaaaaaaaaaggaagagttttaatccactcgacttgttgtggaatgcttttttagggtagtgttctaaacgtatatcgccatattgagttgatcagatgagctctgtctttgtatag

upper sequence: GLYMA08G22140.1 (Glycine max), 5'ss of exon 6
lower sequence: PP1S61_1V6.1 (Physcomitrella patens), 5'ss of exon 6
CCAGATATTTGAGGGACATTCTCATTATGTCATGCAAGTGACATTTAATCCTAAAGACACAAACACCTTTGCCAGTGCATCTCTTGATCGCACCATAAAGgtatatacatgtgttcttctcgctagttgtgtcctgaattttctttgtttatttccatacatctatgataaaaatttaaaagtaatgtattaatgttatcttcaattgcag
||| || |||||||| ||||| ||||||||||||||||||||  | || || || ||||  ||||| || || ||||||||| | ||||||||||| ||||||  |   ||   |  |   ||   || ||  |    || |  ||||||       ||           ||| | |   |  |   | || || ||||            
CCAAATCTTTGAGGGGCATTCACATTATGTCATGCAAGTGACCATCAACCCGAAGGACAACAACACTTTCGCAAGTGCATCTTTAGATCGCACCATCAAGgtactt--ctgaagtgatgcagc-gcttctgggcatgtttatgcttgtttgaaagagtattcactcagctaaattgtgtcaaaatatttttgattttattact--------