1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TTTTACTGCTAAACTTCAGGAAGTGGAAGATTGGCTTTATGATGAGGGTGAAGATGAAACTAAAGGTGTATATATTGCCAAGCTTGAAGAACTCAAAAAGgttaggaagttttgttgataagggaatcctagctcccattcctcagtcaaactgtaatattgtgcaaggaaaagggaccagagtacctcttgctgttatcctttgtgtttttttgcacaaacataaatggtgtgaggtatttccatgctagttttaacataggcaatctcaatgtgattgcag
species | Glycine max |
transcript | GLYMA08G22100.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AAGATGAAACTAAAGGTGTATATATTGCCAAGCTTGAAGAACTCAAAAAG CAAGGTGATCCAATTGATGGGCGATACGAAGAATTCACGGAGAGGGGTACTEST: gi|18038919|gb|BM307213.1|BM307213
genomic: AAGATGAAACTAAAGGTGTATATATTGCCAAGCTTGAAGAACTCAAAAAGgttaggaagt ... gtgattgcagCAAGGTGATCCAATTGATGGGCGATACGAAGAATTCACGGAGAGGGGTACT
EST: AAGATGAAACTAAAGGTGTATATATTGCCAAGCTTGAAGAACTCAAAAAG CAAGGTGATCCAATTGATGGGCGATACGAAGAATTCACGGAGAGGGGTACTEST: gi|51335761|gb|CO979627.1|CO979627
genomic: AAGATGAAACTAAAGGTGTATATATTGCCAAGCTTGAAGAACTCAAAAAGgttaggaagt ... gtgattgcagCAAGGTGATCCAATTGATGGGCGATACGAAGAATTCACGGAGAGGGGTACT
EST: AAGATGAAACTAAAGGTGTATATATTGCCAAGCTTGAAGAACTCAAAAAG CAAGGTGATCCAATTGATGGGCGATACGAAGAATTCACGGAGAGGGGTACT
genomic: AAGATGAAACTAAAGGTGTATATATTGCCAAGCTTGAAGAACTCAAAAAGgttaggaagt ... gtgattgcagCAAGGTGATCCAATTGATGGGCGATACGAAGAATTCACGGAGAGGGGTACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTTACTGCTAAACTTCAGGAAGTGGAAGATTGGCTTTATGATGAGGGTGAAGATGAAACTAAAGGTGTATATATTGCCAAGCTTGAAGAACTCAAAAAGgttaggaagttttgttgataagggaatcctagctcccattcctcagtcaaactgtaatattgtgcaaggaaaagggaccagagtacctcttgctgttatcctttgtgtttttttgcacaaacataaatggtgtgaggtatttccatgctagttttaacataggcaatctcaatgtgattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC