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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACTCAGTTCTCCTTACTTGGGCAATGGATCAAAAAACATGAGGAATCCACAGTCTgtaagtacccactttccaaagtttctctctctttcaattcgtttatactaactctctcaaattaacacgctcacatatatggcatacctatacacacattttgagtaggacaaaaatacctactaagacatataattgaggggaaagtttcctcttttctttattttcttttgaagcaacag

Basic information

species Glycine max
transcript GLYMA08G21770.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G21770.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv09s0002g04120.t01 (Vitis vinifera), 5'ss of exon 6
GCACTCAGTTCTCCTTACTTGGGCAATGGATCAAAAAACATGAGGAATCCACAGTCTgtaagtacccac---tttccaaagtttctctctctttcaattcgtttatactaa---ctctctcaaattaacacgctcacatatatggcatacctatacacacattttgagtaggacaa---aaatacctactaagacatataattgaggggaaagtttcctcttttctttattttcttttgaagcaacag---
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GCCCTTAGCTCTCCGTACTTGGGCAATGCATCAGGAAACATGAGGAACCAACAGTGTgtaagtacccatacatttatacccttttcccatttcccaaagcaacaagccaagatcctctctcccactcactctctctctctctctctctctctctctctctctctccccttgctcaatgtgggtaact-ttaacataaatatatgtagagagagagtgatcaattgattaatgaggatgggtttgttttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12496204|gb|BG046947.1|BG046947
EST:     GTTCTCCTTACTTGGGCAATGGATCAAAAAACATGAGGAATCCACAGTCT                         GTACACGGAGAAAGAAATTCTGTATTTCCTGAGGACCCCGGTCAG
genomic: GTTCTCCTTACTTGGGCAATGGATCAAAAAACATGAGGAATCCACAGTCTgtaagtaccc ... gaagcaacagGTACACGGAGAAAGAAATTCTGTATTTCCTGAGGACCCCGGTCAG
EST: gi|14991661|gb|BI317334.1|BI317334
EST:     GTTCTCCTTACTTGGGCAATGGATCAAAAAACATGAGGAATCCACAGTCT                         GTACACGGAGAAAGAAATTCTGTATTTCCTGAGGACCCCGGTCAG
genomic: GTTCTCCTTACTTGGGCAATGGATCAAAAAACATGAGGAATCCACAGTCTgtaagtaccc ... gaagcaacagGTACACGGAGAAAGAAATTCTGTATTTCCTGAGGACCCCGGTCAG
EST: gi|208212450|gb|GE011467.1|GE011467
EST:     GTTCTCCTTACTTGGGCAATGGATCAAAAAACATGAGGAATCCACAGTCT                         GTACACGGAGAAAGAAATTCTGTATTTCCTGAGGACCCCAGTCAG
genomic: GTTCTCCTTACTTGGGCAATGGATCAAAAAACATGAGGAATCCACAGTCTgtaagtaccc ... gaagcaacagGTACACGGAGAAAGAAATTCTGTATTTCCTGAGGACCCCGGTCAG
EST: gi|208061416|gb|GD860110.1|GD860110
EST:     GTTCTCCTTACTTGGGCAATGGATCAAAAAACATGAGGAATCCACAGTCT                         GTACACGGAGAAAGAAATTCTGTATTTCCTGAGGACCCCGGTCAGCTGTTG
genomic: GTTCTCCTTACTTGGGCAATGGATCAAAAAACATGAGGAATCCACAGTCTgtaagtaccc ... gaagcaacagGTACACGGAGAAAGAAATTCTGTATTTCCTGAGGACCCCGGTCAGCTGTTG