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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGCGATTTTGGTCTGGCGAGGTGGCAGCCTGATGGGGACACAGGTGTCGAAACTAGAGTGATTGGAACATTTGGgtaagtattgtattgtgcttgaaacaatttcatccttaaacttgtatatgaaaatatcagattgcaactaagctatgccatttctgtgtag

Basic information

species Glycine max
transcript GLYMA08G20750.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G20750.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os05g51190.2 (Oryza sativa), 5'ss of exon 5
-----------------------GTTGGCGATTTTGGTCTGGCGAGGTGGCAGCCTGATGGGGACACAGGTGTCGAAACTAGAGTGATTGGAACATTTGGgtaagtattgtattgtgct-tgaaacaatttcatccttaa--acttgta---tatgaaaatatcagat-tgcaactaagctatgccatttctgtgtag
                       || || ||||||||  |||| || |||||||||||||| ||||  ||||||||||| ||||| ||||| ||||||||||||||  |      | |  |  | ||||    |||||    |  ||||   | ||||||   || || ||  || |   |  |||||    ||| ||
AAGTATCGTCATATCGTGTGCAGGTCGGAGATTTTGGGTTGGCTAGATGGCAGCCTGATGGAGACATGGGTGTCGAAACAAGAGTAATTGGCACATTTGGgtaagtgctcagccatacaatccatcaatcctgtcctttgtgaggtgtaacttgtgaaaaaggcatatctgagaccattttcggccat----gtgcag

upper sequence: GLYMA08G20750.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv09s0002g02420.t01 (Vitis vinifera), 5'ss of exon 6
GTTGGCGATTTTGGTCTGGCGAGGTGGCAGCCTGATGGGGACACAGGTGTCGAAACTAGAGTGATTGGAACATTTGGgtaagtattgtattgtgcttgaaacaatttcatccttaaacttgtata---tgaaaatatcagattgcaactaagctatgccatttctgtgtag
||||| |||||||| ||||| ||||||||||||||||| ||||| ||||| ||||| ||||| |||||||||||||||||| || || ||      |    |  ||| |   | |  |||  | |   | | | ||||| ||   | |||  ||   || ||  | |||||
GTTGGGGATTTTGGCCTGGCTAGGTGGCAGCCTGATGGAGACACGGGTGTGGAAACAAGAGTAATTGGAACATTTGGgtaactactgaatgacagcttttgc--tttaactttaatgctttcacactgttatagtatcaaat--gagctattctgctcc-ttgttatgtag