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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCTTTTAGATTGTATGACTTGAGACAGACTGGATATATTGAGAGAGAAGAAgtgagtatcttggcatgtccaggttatgaatatgtttttagcttaaatatatttgtcatcatagaattatattgccctagagttcccttactgcaattta...

Basic information

species Glycine max
transcript GLYMA08G20700.2
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208254965|gb|GE056915.1|GE056915
EST:     CTTTTAGATTGTATGACTTGAGACAGACTGGATATATTGAGAGAGAAGAA                         GTTAGGCAAATGGTTGTTGCCATTCTGTCAGAA
genomic: CTTTTAGATTGTATGACTTGAGACAGACTGGATATATTGAGAGAGAAGAAgtgagtatct ... ctttttccagGTTAGGCAAATGGTTGTTGCCATTCTGTCAGAA
EST: gi|193568335|gb|FK523902.1|FK523902
EST:     CTTTTAGATTGTATGACTTGAGACAGACTGGATATATTGAGAGAGAAGAA                         GTT-GGCAA-TGGTTGTTNCCATTCTGTCAGAA
genomic: CTTTTAGATTGTATGACTTGAGACAGACTGGATATATTGAGAGAGAAGAAgtgagtatct ... ctttttccagGTTAGGCAAATGGTTGTTGCCATTCTGTCAGAA
EST: gi|192329211|gb|FK020130.1|FK020130
EST:     CTTTTAGATTGTATGACTTGAGACAGACTGGATATATTGAGAGAGAAGAA                         GTTAGGCAAATGGTTGTTGCCATTCTGTCAGAATGTGGCATGGATCTGGAT
genomic: CTTTTAGATTGTATGACTTGAGACAGACTGGATATATTGAGAGAGAAGAAgtgagtatct ... ctttttccagGTTAGGCAAATGGTTGTTGCCATTCTGTCAGAATGTGGCATGGATCTGGAT
EST: gi|151410451|gb|EV280266.1|EV280266
EST:     CTTTTAGATTGTATGACTTGAGACAGACTGGATATATTGAGAGAGAAGAA                         GTTAGGCAAATGGTTGTTGCCATTCTGTCAGAATGTGGCATGGATCTGGAT
genomic: CTTTTAGATTGTATGACTTGAGACAGACTGGATATATTGAGAGAGAAGAAgtgagtatct ... ctttttccagGTTAGGCAAATGGTTGTTGCCATTCTGTCAGAATGTGGCATGGATCTGGAT
EST: gi|208067823|gb|GD864945.1|GD864945
EST:     CTTTTAGATTGTATGACTTGAGACAGACTGGATATATTGAGAGAGAAGAA                         GTTAGGCAAATGGTTGTTGCCATTCTGTCAGAATGTGGCATGGATCTGGAT
genomic: CTTTTAGATTGTATGACTTGAGACAGACTGGATATATTGAGAGAGAAGAAgtgagtatct ... ctttttccagGTTAGGCAAATGGTTGTTGCCATTCTGTCAGAATGTGGCATGGATCTGGAT
EST: gi|193521327|gb|FK478590.1|FK478590
EST:     CTTTTAGATTGTATGACTTGAGACAGACTGGATATATTGAGAGAGAAGAA                         GTTAGGCAAAT
genomic: CTTTTAGATTGTATGACTTGAGACAGACTGGATATATTGAGAGAGAAGAAgtgagtatct ... ctttttccagGTTAGGCAAAT
EST: gi|151396695|gb|EV266568.1|EV266568
EST:     CTTTTAGATTGTATGACTTGAGACAGACTGGATATATTGAGAGAGAAGAA                         GTTAGGCAAATGGTTGTTGCCATTCTGTCAGAATGTGGCATGGATCTGGAT
genomic: CTTTTAGATTGTATGACTTGAGACAGACTGGATATATTGAGAGAGAAGAAgtgagtatct ... ctttttccagGTTAGGCAAATGGTTGTTGCCATTCTGTCAGAATGTGGCATGGATCTGGAT