1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ATTCGTCCAGATCGTCAAACTTTGTATTGGAGTGCTACCTGGCCAAAGGAGGTTGAACAATTGGCAAGGAAGTTCCTTTATAACCCATACAAAgtaagatattttcatgttgggatatgcaactgtatttttttcttttaaatttcattcctctatgctgaatggttttcggtctgaaatgaattgtcttttaagaagaatgtatgatgtttatgtatagtattgtattttgtgagaactttatatatttaagtaacaatttctgtaatcattgtgcag
species | Glycine max |
transcript | GLYMA08G20670.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AAGGAAGTTCCTTTATAACCCATACAAA GTAATTATAGGCTCTTCAGATTTAAAAGCTAACCATGCAATACGGCAATATEST: gi|58020876|gb|CX707618.1|CX707618
genomic: AAGGAAGTTCCTTTATAACCCATACAAAgtaagatatt ... cattgtgcagGTAATTATAGGCTCTTCAGATTTAAAAGCTAACCATGCAATACGGCAATAT
EST: GAGGTTGACCAATNGGCAAGGAAGTTCCTTTATAACCCATACAAA GTAATTATAGGCTCTTCAGATTAAAAAGCTAACCATGCAATACGGCAATATEST: gi|58020680|gb|CX707422.1|CX707422
genomic: GAGGTTGAACAATTGGCAAGGAAGTTCCTTTATAACCCATACAAAgtaagatatt ... cattgtgcagGTAATTATAGGCTCTTCAGATTTAAAAGCTAACCATGCAATACGGCAATAT
EST: CAAAGGAGGTTGAACAATTGGCAAGGAAGTTCCTTTATAACCCATACAAA GTAATTATAGGCTCTTCAGATTTAAAAGCTAACCATGCAATACGGCAATATEST: gi|15204508|gb|BI427276.1|BI427276
genomic: CAAAGGAGGTTGAACAATTGGCAAGGAAGTTCCTTTATAACCCATACAAAgtaagatatt ... cattgtgcagGTAATTATAGGCTCTTCAGATTTAAAAGCTAACCATGCAATACGGCAATAT
EST: CAAAGGAGGTTGAACAATTGGCAAGGAAGTTCCTTTATAACCCATACAAA GTAATTATAGGCTCTTCAGATTTAAAAGCTAACCATGCAATACGGCAATAT
genomic: CAAAGGAGGTTGAACAATTGGCAAGGAAGTTCCTTTATAACCCATACAAAgtaagatatt ... cattgtgcagGTAATTATAGGCTCTTCAGATTTAAAAGCTAACCATGCAATACGGCAATAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTCGTCCAGATCGTCAAACTTTGTATTGGAGTGCTACCTGGCCAAAGGAGGTTGAACAATTGGCAAGGAAGTTCCTTTATAACCCATACAAAgtaagatattttcatgttgggatatgcaactgtatttttttcttttaaatttcattcctctatgctgaatggttttcggtctgaaatgaattgtcttttaagaagaatgtatgatgtttatgtatagtattgtattttgtgagaactttatatatttaagtaacaatttctgtaatcattgtgcag
- - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA