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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCCATTGATCGGTCTGTAGCACACTTACTGTTTCACAGGCCCTCAGATCCATCGGTGTTGCTTCCTAACGAAACTTTACCTTTCAAATCCAGTGCCACGgtatgctttcatgaatttttgacattttttcgatgaagtagaattgtagaaagagtactcattggtttaattgacag

Basic information

species Glycine max
transcript GLYMA08G19150.4
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G19150.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv12s0178g00040.t01 (Vitis vinifera), 5'ss of exon 7
---CCCCATTGATCGGTCTGTAGCACACTTACTGTTTCACAGGCCCTCAGATCCATCGGTGTTGCTTCCTAACGAAACTTTACCTTTCAAATCCAGTGCCACGgtatgctttcatgaatttttgacattttttcgatgaagtagaattgtagaaagagtactcatt------ggtttaattgacag
    || |||||||||||| |||||||||||||||||||| |||| ||||| |||||  |  |||   | || ||  | ||| || | || ||      || |||| ||  |||   ||||      ||| | | |   |      || |   | ||  ||| |||        ||| ||| ||||
AAATCCAATTGATCGGTCTATAGCACACTTACTGTTTCACCGGCCTTCAGACCCATCTATAGTGC---CCAATGATGCATTATCTCTGAAGTCTCAAAACATGgtaagcagtcac--atttgcattctttatgctagacaaccattttttcccatgatgactgattcctttgaattttatttacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31464630|gb|CD406898.1|CD406898
EST:     CATCGGTGTTGCTTCCTAACGAAACTTTACCTTTCAAATCCAGTGCCACG                         ACGCATAATGGATCAGTGATCAATCCACCAGTAAAGACTGAGAAACAGGTC
genomic: CATCGGTGTTGCTTCCTAACGAAACTTTACCTTTCAAATCCAGTGCCACGgtatgctttc ... taattgacagATGCATAATGGATCAGTGATCAATCCACCAGTAAAGACTGAGAAACAGGTC