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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGCTAAGAGTGCTGAGCAAAGACATAATAATTCAAATGCAAATGGTTGCATTGGAGATGATGAAACATGCAAAGCAATGATGGCGCAGGATGCAAACAGgtattgcttactttcttcgcttcagatttatatttttcttgactacaaggtagccaatataaaaacccatcagaatagtgtatagcatgattttgagtgt...

Basic information

species Glycine max
transcript GLYMA08G19150.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254341964|gb|GR853101.1|GR853101
EST:     ATTGGAGATGATGAAACATGCAAAGCAATGATGGCGCAGGATGCAAACAG                         GTGTGCCGGATTAATGGATATGGAAACTGACACAAACCCCATTGATCGGTC
genomic: ATTGGAGATGATGAAACATGCAAAGCAATGATGGCGCAGGATGCAAACAGgtattgctta ... tttcattcagGTGTGCCGGATTAATGGATATGGAAACTGACACAAACCCCATTGATCGGTC
EST: gi|14011720|gb|BG726642.1|BG726642
EST:     ATTGGAGATGATGAAACATGCAAAGCAATGATGGCGCAGGATGCAAACAG                         GTGTGCCGGATTAATGGATATGGAAACTGACACAAACCCCATTGATCGGTC
genomic: ATTGGAGATGATGAAACATGCAAAGCAATGATGGCGCAGGATGCAAACAGgtattgctta ... tttcattcagGTGTGCCGGATTAATGGATATGGAAACTGACACAAACCCCATTGATCGGTC
EST: gi|19271298|gb|BM887554.1|BM887554
EST:     ATTGGAGATGATGAAACATGCAAAGCAATGATGGCGCAGGATGCAAACAG                         GTGTGCCGGATTAATGGATATGGAAACTGACACAAACCCCATTGATCGGTC
genomic: ATTGGAGATGATGAAACATGCAAAGCAATGATGGCGCAGGATGCAAACAGgtattgctta ... tttcattcagGTGTGCCGGATTAATGGATATGGAAACTGACACAAACCCCATTGATCGGTC
EST: gi|51335965|gb|CO979831.1|CO979831
EST:     ATTGGAGATGATGAAACATGCAAAGCAATGATGGCGCAGGATGCAAACAG                         GTGTGCCGGATTAATGGATATGGAAACTGACACAAACCCCATTGATCGGTC
genomic: ATTGGAGATGATGAAACATGCAAAGCAATGATGGCGCAGGATGCAAACAGgtattgctta ... tttcattcagGTGTGCCGGATTAATGGATATGGAAACTGACACAAACCCCATTGATCGGTC
EST: gi|22540857|gb|BU090700.1|BU090700
EST:     ATTGGAGATGATGAAACATGCAAAGCAATGATGGCGCAGGATGCAAACAG                         GTGTGCCGGATTAATGGATATGGAAACTGACACAAACCCCATTGATCGGTC
genomic: ATTGGAGATGATGAAACATGCAAAGCAATGATGGCGCAGGATGCAAACAGgtattgctta ... tttcattcagGTGTGCCGGATTAATGGATATGGAAACTGACACAAACCCCATTGATCGGTC
EST: gi|27424181|gb|CA935701.1|CA935701
EST:     ATTGGAGATGATGAAACATGCAAAGCAATGATGGCGCAGGATGCAAACAG                         GTGTGCCGGATTAATGGATATGGAAACTGACACAAACCCCATTGATCGGTC
genomic: ATTGGAGATGATGAAACATGCAAAGCAATGATGGCGCAGGATGCAAACAGgtattgctta ... tttcattcagGTGTGCCGGATTAATGGATATGGAAACTGACACAAACCCCATTGATCGGTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGCTAAGAGTGCTGAGCAAAGACATAATAATTCAAATGCAAATGGTTGCATTGGAGATGATGAAACATGCAAAGCAATGATGGCGCAGGATGCAAACAGgtattgcttactttcttcgcttcagatttatatttttcttgactacaaggtagccaatataaaaacccatcagaatagtgtatagcatgattttgagtgt

- - - - - - - - - - - - - - - - - - - - - - - - -  TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGATG