Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGGATGATGAGCGTGAAATGTGTGCCCGGACTATCTATTGTACAAATATTGATAAAAAGgtatatttacttcttgagaaattacagaacaaatatttttggtaaaactatttttaatttaggaatggtattgagtattgacttaatttgctgtctttaa...

Basic information

species Glycine max
transcript GLYMA08G18810.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G18810.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv19s0176g00140.t01 (Vitis vinifera), 5'ss of exon 6
TCGGATGATGAGCGTGAAATGTGTGCCCGGACTATCTATTGTACAAATATTGATAAAAAGgtat-------atttacttcttgagaaattacagaaca-aatattttt-----------ggtaaaactatttttaatttaggaatggtattgagtattgacttaat---ttgctgtct-ttaa------------------------------------------------------------
|| || |||||||| |||||||||||  ||||| |||||||||||||||||||||| |||||||       |  |  | || |   ||| |   |||  |||| ||||             |  | || | | |   ||| ||     ||    |  ||  || ||   | | ||| | ||||                                                            
TCAGAGGATGAGCGGGAAATGTGTGCTAGGACTGTCTATTGTACAAATATTGATAAGAAGgtattgtcctcaccttgtcctggttgaatgattaaacttaatagttttctaccacacttaatgcatctttctgtttcttatgatgcacatcagatcatggtttcatgcctggatgtatattaatggtggcaacttttcgcttaattgagtggttcctagttaaagatttttttcttagtgcag

upper sequence: GLYMA08G18810.1 (Glycine max), 5'ss of exon 6
lower sequence: PP1S62_224V6.1 (Physcomitrella patens), 5'ss of exon 6
TCGGATGATGAGCGTGAAATGTGTGCCCGGACTATCTATTGTACAAATATTGATAAAAAGgtatatttacttcttgagaaattacagaacaa-atatttttggtaaaactatttttaatttaggaatggtattgagtattgacttaatttgctgtctttaa
|| || |||||||||||||||||||| ||||| ||||| |||||||||||||| || |||||  | |    |       |||| |        ||  |   | | | |    |     ||   |  || | ||  |   | | ||  | | || | | |  
TCTGAAGATGAGCGTGAAATGTGTGCACGGACCATCTACTGTACAAATATTGACAAGAAGgtgaagtggagtgaaatagaatttcgttgttctatgctgacgatgagatccatccgttttactgcctgcttttttgcgataagttgctcttctctttgtg-

upper sequence: GLYMA08G18810.1 (Glycine max), 5'ss of exon 6
lower sequence: PP1S196_50V6.1 (Physcomitrella patens), 5'ss of exon 7
TCGGATGATGAGCGTGAAATGTGTGCCCGGACTATCTATTGTACAAATATTGATAAAAAGgt---------------atatttacttcttgagaaattacagaacaaatatttttggtaaaactatttttaatttaggaatggtat----tgagtattgacttaatttgctgtctttaa--------------------------------------------------------------------------------
|| || || ||||||||||||||||| || || ||||| ||||||||||||||||| |||||               | | || | |  |   |   | |  |  |    | ||   | |   | |  |   ||  | || | |||    ||  | |  | |   | |||  |  || |                                                                                
TCTGAAGACGAGCGTGAAATGTGTGCACGTACCATCTACTGTACAAATATTGATAAGAAGgtgaagtggagtgaaatagactttcattcttctaggctgccaattagccctgttcatttactgtctaatctgttgtgaaaagttatggcatggttgtgtattcgttgtgccatggttcacgaggtggtgggaagttttcatgctagtaccacattgtaatgtatggccggggctctgagcgagcagtgacttgatgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19934604|gb|BQ079634.1|BQ079634
EST:     AGCGTGAAATGTGTGCCCGGACTATCTATTGTACAAATATTGATAAAAAG                         GTTTCTCAAGCTGAAGTGAAGAANNNNNNNGAATCAGCTTGTGGCGAG
genomic: AGCGTGAAATGTGTGCCCGGACTATCTATTGTACAAATATTGATAAAAAGgtatatttac ... atgagtgcagGTTTCTCAAGCTGAAGTGAAGAATTTTTTTGAATCAGCTTGTGGCGAG