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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTACAATATTGGGGAATAAGAGAAAACTACAGGGGGACCCATGCATTTTACTTGCACATGATGGTCAGTCTCAAGCAAGAGTTCAAGAACTGAAGGACATgtaagacattactgaaattcaatctcttttttttttttttttcatacaaattatgcgtaaacatttatttatttatttatgtttttttaaatgtcaccta...

Basic information

species Glycine max
transcript GLYMA08G18720.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193586034|gb|FK539922.1|FK539922
EST:     CTTGCACATGATGGTCAGTCTCAAGCAAGAGTTCAAGAACTGAAGGACAT                         TCTTGGGAAAGAGGCAAAGTCAGTTTTGAGGTCAATTGGCTGGACTGATAA
genomic: CTTGCACATGATGGTCAGTCTCAAGCAAGAGTTCAAGAACTGAAGGACATgtaagacatt ... tattgctcagTCTTGGGAAAGAGGCAAAGTCAGTTTTGAGGTCAATTGGCTGGACTGATAA
EST: gi|51337923|gb|CO981789.1|CO981789
EST:     CTTGCACATGATGGTCAGTCTCAAGCAAGAGTTCAAGAACTGAAGGACAT                         TCTTGGGAAAGAGGCAAAGTCAGTTTTGAGGTCAATTGGCTGGACTGATAA
genomic: CTTGCACATGATGGTCAGTCTCAAGCAAGAGTTCAAGAACTGAAGGACATgtaagacatt ... tattgctcagTCTTGGGAAAGAGGCAAAGTCAGTTTTGAGGTCAATTGGCTGGACTGATAA
EST: gi|193311200|gb|FK276426.1|FK276426
EST:     CTTGCACATGATGGTCAGTCTCAAGCAAGAGTTCAAGAACTGAAGGACAT                         TCTTGGGAAAGAGGCAAAGTCAGTTTTGAGGTCAATTGGCTGGACTGATAA
genomic: CTTGCACATGATGGTCAGTCTCAAGCAAGAGTTCAAGAACTGAAGGACATgtaagacatt ... tattgctcagTCTTGGGAAAGAGGCAAAGTCAGTTTTGAGGTCAATTGGCTGGACTGATAA
EST: gi|51345019|gb|CO985752.1|CO985752
EST:     CTTGCACATGATGGTCAGTCTCAAGCAAGAGTTCAAGAACTGAAGGACAT                         TCTTGGGAAAGAGGCAAAGTCAGTTTTGAGGTCAATTGGCTGGACTGATAA
genomic: CTTGCACATGATGGTCAGTCTCAAGCAAGAGTTCAAGAACTGAAGGACATgtaagacatt ... tattgctcagTCTTGGGAAAGAGGCAAAGTCAGTTTTGAGGTCAATTGGCTGGACTGATAA
EST: gi|254317312|gb|GR826257.1|GR826257
EST:     CAAGAACTGAAGGACAT                         TCTTGGGAAAGAGGCAAAGTCAGTTTTGAGGTCAATTGGCTGGACTGATAA
genomic: CAAGAACTGAAGGACATgtaagacatt ... tattgctcagTCTTGGGAAAGAGGCAAAGTCAGTTTTGAGGTCAATTGGCTGGACTGATAA
EST: gi|192329427|gb|FK022175.1|FK022175
EST:     CTTGCACATGATGGTCAGTCTCAAGCAAGAGTTCAAGAACTGAAGGACAT                         TCTTGGGAAAGAGGCAAAGTCAGTTTTGAGGTCAATTGGCTGGACTGATAA
genomic: CTTGCACATGATGGTCAGTCTCAAGCAAGAGTTCAAGAACTGAAGGACATgtaagacatt ... tattgctcagTCTTGGGAAAGAGGCAAAGTCAGTTTTGAGGTCAATTGGCTGGACTGATAA
EST: gi|254317311|gb|GR826256.1|GR826256
EST:     CTTGCACATGATGGTCAGTCTCAAGCAAGAGTTCAAGAACTGAAGGACAT                         TCTTGGGAAAGAGGCAAAGTCAGTTTTGAGGTCAATTGGCTGGACTGATAA
genomic: CTTGCACATGATGGTCAGTCTCAAGCAAGAGTTCAAGAACTGAAGGACATgtaagacatt ... tattgctcagTCTTGGGAAAGAGGCAAAGTCAGTTTTGAGGTCAATTGGCTGGACTGATAA
EST: gi|26058126|gb|CA801040.1|CA801040
EST:     CTTGCACATGATGGTCAGTCTCAAGCAAGAGTTCAAGAACTGAAGGACAT                         TCTTGGGAAAGAGGCAAAGTCAGTTTTGAGGTCAATTGGCTGGACTGATAA
genomic: CTTGCACATGATGGTCAGTCTCAAGCAAGAGTTCAAGAACTGAAGGACATgtaagacatt ... tattgctcagTCTTGGGAAAGAGGCAAAGTCAGTTTTGAGGTCAATTGGCTGGACTGATAA
EST: gi|9820918|gb|BE556428.1|BE556428
EST:     CTTGCACATGATGGTCAGTCTCAAGCAAGAGTTCAAGAACTGAAGGACAT                         TCTTGGGAAAGAGGCAAAGTCAGT
genomic: CTTGCACATGATGGTCAGTCTCAAGCAAGAGTTCAAGAACTGAAGGACATgtaagacatt ... tattgctcagTCTTGGGAAAGAGGCAAAGTCAGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTACAATATTGGGGAATAAGAGAAAACTACAGGGGGACCCATGCATTTTACTTGCACATGATGGTCAGTCTCAAGCAAGAGTTCAAGAACTGAAGGACATgtaagacattactgaaattcaatctcttttttttttttttttcatacaaattatgcgtaaacatttatttatttatttatgtttttttaaatgtcaccta

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG