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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAACGCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAGgtatgtttaattttgatggcttgccatgttcagttttctcccatatttctcttagcgtcttcaaaattaactaacaaaattgtcatgtgttgttgtccttttcatagaag

Basic information

species Glycine max
transcript GLYMA08G18560.3
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G18560.3 (Glycine max), 5'ss of exon 6
lower sequence: Vv14s0006g02010.t01 (Vitis vinifera), 5'ss of exon 6
CCAACGCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAG---GAGAAGgtatgtttaattttgatggcttgccatgttcagttttctcccatatttctcttagcgtcttcaaaattaactaacaaaattgtcatgtgttgttgtccttttcatagaag
|| || || ||||||||| | ||||||||||||||||||||||| ||||   | |||||||||  ||||  |  |  | |  |   || | |  |  | | | |  |   |||    |  ||| ||||| |      || |||  | |  ||    |  |  | |   
CCCACACAACAGCAAACAAGATACCGGAAATCTCCTTATGCTCCATCAGATGGTGAAGgtatgcctaatgat--taacatagc---tttactcatacctcttgtcccagataggaaataaaaagttaacaag---gtttctcaaat-tcatttagttacttgttgcc-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8827757|gb|BE211487.1|BE211487
EST:     GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAG                         A
genomic: GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAGgtatgtttaa ... ttcatagaag-
EST: gi|8827757|gb|BE211487.1|BE211487
EST:     GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAG                         A
genomic: GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAGgtatgtttaa ... ttcatagaag-
EST: gi|8827757|gb|BE211487.1|BE211487
EST:     GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAG                         A
genomic: GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAGgtatgtttaa ... ttcatagaag-
EST: gi|31305685|gb|CD390888.1|CD390888
EST:     GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAG                         A
genomic: GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAGgtatgtttaa ... ttcatagaag-
EST: gi|31305685|gb|CD390888.1|CD390888
EST:     GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAG                         A
genomic: GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAGgtatgtttaa ... ttcatagaag-
EST: gi|31305685|gb|CD390888.1|CD390888
EST:     GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAG                         A
genomic: GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAGgtatgtttaa ... ttcatagaag-
EST: gi|254324562|gb|GR833987.1|GR833987
EST:     GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAG                         A
genomic: GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAGgtatgtttaa ... ttcatagaag-
EST: gi|254324562|gb|GR833987.1|GR833987
EST:     GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAG                         A
genomic: GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAGgtatgtttaa ... ttcatagaag-
EST: gi|254324562|gb|GR833987.1|GR833987
EST:     GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAG                         A
genomic: GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAGgtatgtttaa ... ttcatagaag-
EST: gi|192313316|gb|FK005088.1|FK005088
EST:     GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCGGGAGAAG                         A
genomic: GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAGgtatgtttaa ... ttcatagaag-
EST: gi|192313316|gb|FK005088.1|FK005088
EST:     GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCGGGAGAAG                         A
genomic: GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAGgtatgtttaa ... ttcatagaag-
EST: gi|192313316|gb|FK005088.1|FK005088
EST:     GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCGGGAGAAG                         A
genomic: GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAGgtatgtttaa ... ttcatagaag-
EST: gi|193451500|gb|FK420608.1|FK420608
EST:     GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAG                         A
genomic: GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAGgtatgtttaa ... ttcatagaag-
EST: gi|193451500|gb|FK420608.1|FK420608
EST:     GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAG                         A
genomic: GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAGgtatgtttaa ... ttcatagaag-
EST: gi|193451500|gb|FK420608.1|FK420608
EST:     GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAG                         A
genomic: GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAGgtatgtttaa ... ttcatagaag-
EST: gi|19348889|gb|BM893421.1|BM893421
EST:     GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAG                         A
genomic: GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAGgtatgtttaa ... ttcatagaag-
EST: gi|19348889|gb|BM893421.1|BM893421
EST:     GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAG                         A
genomic: GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAGgtatgtttaa ... ttcatagaag-
EST: gi|19348889|gb|BM893421.1|BM893421
EST:     GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAG                         A
genomic: GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAGgtatgtttaa ... ttcatagaag-
EST: gi|207729552|gb|GD707336.1|GD707336
EST:     GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAGAAG                       
genomic: GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCA-G-G-AGAAGgtatgtttaa ... ttcataga
EST: gi|6069887|gb|AW099483.1|AW099483
EST:     GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAG                         A
genomic: GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAGgtatgtttaa ... ttcatagaag-
EST: gi|6069887|gb|AW099483.1|AW099483
EST:     GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAG                         A
genomic: GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAGgtatgtttaa ... ttcatagaag-
EST: gi|6069887|gb|AW099483.1|AW099483
EST:     GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAG                         A
genomic: GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAGgtatgtttaa ... ttcatagaag-
EST: gi|6072271|gb|AW101658.1|AW101658
EST:     GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAG                         A
genomic: GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAGgtatgtttaa ... ttcatagaag-
EST: gi|6072271|gb|AW101658.1|AW101658
EST:     GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAG                         A
genomic: GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAGgtatgtttaa ... ttcatagaag-
EST: gi|6072271|gb|AW101658.1|AW101658
EST:     GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAG                         A
genomic: GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAGgtatgtttaa ... ttcatagaag-
EST: gi|10233289|gb|BE802177.1|BE802177
EST:     GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAG                         A
genomic: GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAGgtatgtttaa ... ttcatagaag-
EST: gi|10233289|gb|BE802177.1|BE802177
EST:     GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAG                         A
genomic: GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAGgtatgtttaa ... ttcatagaag-
EST: gi|10233289|gb|BE802177.1|BE802177
EST:     GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAG                         A
genomic: GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAGgtatgtttaa ... ttcatagaag-
EST: gi|27426337|gb|CA937857.1|CA937857
EST:     GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAG                         A
genomic: GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAGgtatgtttaa ... ttcatagaag-
EST: gi|27426337|gb|CA937857.1|CA937857
EST:     GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAG                         A
genomic: GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAGgtatgtttaa ... ttcatagaag-
EST: gi|27426337|gb|CA937857.1|CA937857
EST:     GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAG                         A
genomic: GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAGgtatgtttaa ... ttcatagaag-
EST: gi|192313317|gb|FK005089.1|FK005089
EST:     GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCGGGAGAAG                         A
genomic: GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAGgtatgtttaa ... ttcatagaag-
EST: gi|192313317|gb|FK005089.1|FK005089
EST:     GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCGGGAGAAG                         A
genomic: GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAGgtatgtttaa ... ttcatagaag-
EST: gi|192313317|gb|FK005089.1|FK005089
EST:     GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCGGGAGAAG                         A
genomic: GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAGgtatgtttaa ... ttcatagaag-
EST: gi|10233243|gb|BE802131.1|BE802131
EST:     GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAG                         A
genomic: GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAGgtatgtttaa ... ttcatagaag-
EST: gi|10233243|gb|BE802131.1|BE802131
EST:     GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAG                         A
genomic: GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAGgtatgtttaa ... ttcatagaag-
EST: gi|10233243|gb|BE802131.1|BE802131
EST:     GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAG                         A
genomic: GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAGgtatgtttaa ... ttcatagaag-
EST: gi|6914757|gb|AW396287.1|AW396287
EST:     GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAG                         A
genomic: GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAGgtatgtttaa ... ttcatagaag-
EST: gi|6914757|gb|AW396287.1|AW396287
EST:     GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAG                         A
genomic: GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAGgtatgtttaa ... ttcatagaag-
EST: gi|6914757|gb|AW396287.1|AW396287
EST:     GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAG                         A
genomic: GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAGgtatgtttaa ... ttcatagaag-
EST: gi|6914757|gb|AW396287.1|AW396287
EST:     GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAG                         A
genomic: GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAGgtatgtttaa ... ttcatagaag-
EST: gi|7639980|gb|AW734290.1|AW734290
EST:     GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAG                         A
genomic: GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAGgtatgtttaa ... ttcatagaag-
EST: gi|7639980|gb|AW734290.1|AW734290
EST:     GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAG                         A
genomic: GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAGgtatgtttaa ... ttcatagaag-
EST: gi|7639980|gb|AW734290.1|AW734290
EST:     GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAG                         A
genomic: GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAGgtatgtttaa ... ttcatagaag-
EST: gi|4303380|gb|AI443468.1|AI443468
EST:     GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAG                         A
genomic: GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAGgtatgtttaa ... ttcatagaag-
EST: gi|4303380|gb|AI443468.1|AI443468
EST:     GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAG                         A
genomic: GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAGgtatgtttaa ... ttcatagaag-
EST: gi|4303380|gb|AI443468.1|AI443468
EST:     GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAG                         A
genomic: GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAGgtatgtttaa ... ttcatagaag-
EST: gi|254324561|gb|GR833986.1|GR833986
EST:     GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAG                         A
genomic: GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAGgtatgtttaa ... ttcatagaag-
EST: gi|254324561|gb|GR833986.1|GR833986
EST:     GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAG                         A
genomic: GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAGgtatgtttaa ... ttcatagaag-
EST: gi|254324561|gb|GR833986.1|GR833986
EST:     GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAG                         A
genomic: GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAGgtatgtttaa ... ttcatagaag-
EST: gi|31309242|gb|CD394445.1|CD394445
EST:     GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAG                         A
genomic: GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAGgtatgtttaa ... ttcatagaag-
EST: gi|31309242|gb|CD394445.1|CD394445
EST:     GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAG                         A
genomic: GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAGgtatgtttaa ... ttcatagaag-
EST: gi|31309242|gb|CD394445.1|CD394445
EST:     GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAG                         A
genomic: GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAGgtatgtttaa ... ttcatagaag-
EST: gi|193491775|gb|FK454325.1|FK454325
EST:     GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAG                         A
genomic: GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAGgtatgtttaa ... ttcatagaag-
EST: gi|193491775|gb|FK454325.1|FK454325
EST:     GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAG                         A
genomic: GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAGgtatgtttaa ... ttcatagaag-
EST: gi|193491775|gb|FK454325.1|FK454325
EST:     GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAG                         A
genomic: GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAGgtatgtttaa ... ttcatagaag-
EST: gi|6914456|gb|AW395986.1|AW395986
EST:     GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAG                         A
genomic: GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAGgtatgtttaa ... ttcatagaag-
EST: gi|6914456|gb|AW395986.1|AW395986
EST:     GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAG                         A
genomic: GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAGgtatgtttaa ... ttcatagaag-
EST: gi|6914456|gb|AW395986.1|AW395986
EST:     GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAG                         A
genomic: GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAGgtatgtttaa ... ttcatagaag-
EST: gi|58014741|gb|CX701483.1|CX701483
EST:     GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAG                         A
genomic: GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAGgtatgtttaa ... ttcatagaag-
EST: gi|58014741|gb|CX701483.1|CX701483
EST:     GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAG                         A
genomic: GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAGgtatgtttaa ... ttcatagaag-
EST: gi|58014741|gb|CX701483.1|CX701483
EST:     GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAG                         A
genomic: GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAGgtatgtttaa ... ttcatagaag-
EST: gi|31472363|gb|CD414391.1|CD414391
EST:     GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAG                         A
genomic: GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAGgtatgtttaa ... ttcatagaag-
EST: gi|31472363|gb|CD414391.1|CD414391
EST:     GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAG                         A
genomic: GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAGgtatgtttaa ... ttcatagaag-
EST: gi|31472363|gb|CD414391.1|CD414391
EST:     GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAG                         A
genomic: GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAGgtatgtttaa ... ttcatagaag-
EST: gi|6069892|gb|AW099486.1|AW099486
EST:     GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAG                         A
genomic: GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAGgtatgtttaa ... ttcatagaag-
EST: gi|6069892|gb|AW099486.1|AW099486
EST:     GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAG                         A
genomic: GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAGgtatgtttaa ... ttcatagaag-
EST: gi|6069892|gb|AW099486.1|AW099486
EST:     GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAG                         A
genomic: GCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAGgtatgtttaa ... ttcatagaag-

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCAACGCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAGgtatgtttaattttgatggcttgccatgttcagttttctcccatatttctcttagcgtcttcaaaattaactaacaaaattgtcatgtgttgttgtccttttcatagaag

- - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - GGAGAA