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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTGGCTTTATTGAGTTTGCAGCTGAGGAGGCAAAACGTATATATGGGGATATAGTTCCTGCACCTTTTTCTGATCGGCGATTATTTGTTCTAAAGCAGgtaaacttggtatcttaaatttttatttcagcagttttctgggataactttatacctaaagtgaagcaattttatgatgggatgtctgtacctgatgtaa...

Basic information

species Glycine max
transcript GLYMA08G17450.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G17450.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv19s0085g00880.t01 (Vitis vinifera), 5'ss of exon 6
GGCTGGCTTTATTGAGTTTGCAGCTGAGGAGGCAAAACGTATATATGGGGATATAGTTCCTGCACCTTTTTCTGATCGGCGATTATTTGTTCTAAAGCAGgtaaacttggtatcttaaatttttatttcagcagttttctgggataactttatacctaaagtgaagcaattttatgatgggatgtctgtacctgatgtaa--
||||| ||||||||||||  | || ||||||||||||||||||||||| |||||| ||||  ||||  |  ||||||| ||  |  ||||| |||||||||| ||     |  |||| || || |||  |      || ||    || |   |  || ||      |   |||||  || |||  |   |  | |    |  
GGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGTATATATGGTGATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAGgtgaagc-actggcttatatcttaattctatacaagttttgatgcaaataattgtcttaaacttttct-ctttatcttgagataccccaatttaacaagatt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16278230|gb|BI942795.1|BI942795
EST:     ATATAGTTCCTGCACCTTTTTCTGATCGGCGATTATTTGTTCTAAAGCAG                         CCTGTAGGGGTTGTAGGTGCAATTACACCTTGGAACTTTCCCCTTGCTATG
genomic: ATATAGTTCCTGCACCTTTTTCTGATCGGCGATTATTTGTTCTAAAGCAGgtaaacttgg ... ggatttgcagCCTGTAGGGGTTGTAGGTGCAATTACACCTTGGAACTTTCCCCTTGCTATG
EST: gi|193437007|gb|FK402944.1|FK402944
EST:     ATATAGTTCCTGCACC-TTTTCTGATCGGCGATTA-TTGTTCT-AAGCAG                         CCTGTAGGGGTTGTAGGTGCAATTTACACCTTGGAACTTTCCCCTTGCTAT
genomic: ATATAGTTCCTGCACCTTTTTCTGATCGGCGATTATTTGTTCTAAAGCAGgtaaacttgg ... ggatttgcagCCTGTAGGGGTTGTAGGTGCAA-TTACACCTTGGAACTTTCCCCTTGCTAT