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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATAAGAGACATGCTCCAAGCTAGACCAGATAACAGACCAGATATCACGCAGGCAAGCGCTTTGCTTGATTGGCCATTCATCTCCATCAGTTTAGGTTGgtcatagatcatccatcaatagcattcataggtactagaattagggcaattaattactgactttggatgttcttccgtggtggcag

Basic information

species Glycine max
transcript GLYMA08G15920.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G15920.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os02g37880.3 (Oryza sativa), 5'ss of exon 5
-----------------------------------------------TGATAAGAGACATGCTCCAAGCTAGACCAGATAACAGACCAGATATCACGCAGGCAAGCGCTTTGCTTGATTGGCCATTCATCTCCATCAGTTTAGGTTGgtcatagatcatccatcaatagcattcataggtactagaattagggcaattaattactgactttggatgttcttccgtggtggcag
                                               |||| | ||| |||||  ||||    ||| || ||||||| ||| ||||||||||||| |||||| |||||||||||||||||||||| |   |||||| ||||||||   |       |||| ||   |   ||   |           ||| | ||||  || ||  || | |  |  || |||
TTATCGTATTCCAGAGCAACCCAAGTATAGTGCCGCTGTCACAAAGTTGATCAAAGATATGCTGGAAGCCTCTCCAAATGACAGACCTGATGTCACGCAGgcaagagctttgattgattggccattcatctccatgatactaggttagtcatagactgtt-gcatgtagccttaggaaccacataagcatatttttctaaat-ctgatgttagactttgtacatt--tgacag

upper sequence: GLYMA08G15920.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os09g10720.1 (Oryza sativa), 5'ss of exon 4
-----------------------------------------------TGATAAGAGACATGCTCCAAGCTAGACCAGATAACAGACCAGATATCACGCAGGCAAGCGCTTTGCTTGATTGGCCATTCATCTCCATCAGTTTAGGTTGgtcatagatcatccatcaatagcattcataggtactagaattagggcaattaattactgactttggatgttcttccgtggtggcag
                                               |||| | ||||||||| ||| ||   ||||||  ||||||||| || || |||||||| ||||||||||||||||||||||  ||||| | |||||||| ||| ||  |  | |||     | |    |      || ||      |  ||  |  || | | |   |  | | || | || |   
CTATCGTATCCCAGAGTTACCAAAGTACAGTTCCCCCATTACAAGTCTGATCAAAGACATGCTTCAATCTTCTCCAGATGTCAGACCAGACATTACACAGgcaagggctttgcttgattggccattcacttccatgaatttaggttagtcttaattagttcatgctccgtaaaagtgaaatgtaaaaggtcttctgtt--tctctaattgtatttcatttaccattgtag---

upper sequence: GLYMA08G15920.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G416684_T01 (Zea mays), 5'ss of exon 3
----------------------------------------------------------------------------------------------------------------------TGATAAGAGACATGCTCCAAGCTAGACCAGATAACAGACCAGATATCACGCAGGCAAGCGCTTTGCTTGATTGGCCATTCATCTCCATCAGTTTAGGTTGgtcatagatcatccat-caatagcattcataggtactagaattagggcaattaattactgactttggatgttcttccgtggtggcag
                                                                                                                      | || | |||||||||  |  ||   ||||||  |||||| || ||||| |||||||| ||||||||||||||||||||||  ||||| |  ||||||||||| ||  |  | ||| ||  |  |  |  |   |  |||  |       || | |  |||   |  |||||||    | |      
CTCTTGTATAGAATTTGCTACTTCAAATCAGCATTTGATGGAGAATCAAAGCTCCAAATACTTAACGGGAACTATCGCATCCCAGAATTGCCGAAGTACAgttcttctattacaacacttatcaaagacatgcttaattcttctccagatgccagaccggacatcacacaggcaagggctttgcttgattggccattcacttccatgaacttaggttggtcttaattagtgcatacaccatgaaacgaacacataagagatcttctgtttcaatgttgatgataaatgttctgttttag------

upper sequence: GLYMA08G15920.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G026043_T01 (Zea mays), 5'ss of exon 5
-----------------------------------------------TGATAAGAGACATGCTCCAAGCTAGACCAGATAACAGACCAGATATCACGCAGGCAAGCGCTTTGCTTGATTGGCCATTCATCTCCATCAGTTTAGGTTGgtcatagatcatccatcaatagcattcataggtactagaattagggcaattaattactgactttggatgttcttccgtggtggcag
                                               |||| | ||| |||||  ||||    ||| ||  | ||||||| ||||| |||||||| | |||| ||||||||||||||||||||||     |||||| || |||||    |  |     | |  | |||| |  |||   |  |   |   |  || |   |  || ||||       || |||
TTATCGTATCCCTGAGCAACCCAAGTATAGCACTGCTGTCACAGGGTTGATCAAAGATATGCTGGAAGCCTCTCCAAATTCCCGACCAGACATCACACAGgcaagag-tttgattgattggccattcatctccatggtactaggttagtaataga----ctgttgcatgtagccctaggaatcagataaattgttttctttggcttatgct--atattctgtatatttgacag

upper sequence: GLYMA08G15920.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv13s0156g00640.t01 (Vitis vinifera), 5'ss of exon 6
-----------------------------------------------TGATAAGAGACATGCTCCAAGCTAGACCAGATAACAGACCAGATATCACGCAGGCAAGCGCTTTGCTTGATTGGCCATTCATCTCCATCAGTTTAGGTTGgtcatagatcatcca--tcaatagcattcataggtactagaattagggcaattaattactgactttggatgttcttccgtggtggcag
                                               | || || |||||||| ||||||   ||||| ||  ||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||  |||||  |     || ||  ||    ||||  | || | |        |   | || |   ||  | || |    |  ||||||
CTACCGCATTCCAGAATTGCCAAAATACAGCTCGAATGTGACAGACCTAATCAGGGACATGCTGCAAGCTTCTCCAGACAATCGACCAGACATCACGCAGgcaagcgctttgcttgattggccattcatctccatgactttaggttagttttagatggtttgagtccatgtcaacattaggggccaggaattttctgtctgcatgctaatgctgattctttta--atcatggcag