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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATCTGTGAAATATGGTTTGCTGTATCATGGATAATGGATCAGTTTCCAAAATGGTACCCAATACAGCGAGAAACATACCTTGATCGTCTGTCACTCAGgtaattgagcctacctaccatatctggtgatttttatttcttgatttgcatttattctgtacccaagtatatctcattctaattttcacgcttaaaagtcctactttcttgctcaagattggctttttacattgcggcag

Basic information

species Glycine max
transcript GLYMA08G15380.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G15380.1 (Glycine max), 5'ss of exon 6
lower sequence: AT5G64740.1 (Arabidopsis thaliana), 5'ss of exon 5
TCATCTGTGAAATATGGTTTGCTGTATCATGGATAATGGATCAGTTTCCAAAATGGTACCCAATACAGCGAGAAACATACCTTGATCGTCTGTCACTCAGgtaattgagcct----acctaccatatctggtgatttttatttcttgatttgcatttattctgtacccaagtatatctcattctaattttcacgcttaaaagtcctactttcttgctcaagattggctttttacattgcggcag
| || ||||| |||||||||||||| |||||| |  | |||||||| || ||||||||||| ||  |||||||||| ||| | || || || ||| | ||||| ||    ||       ||  | |  |||  || || |    ||| ||||    |||  |   ||  | | | | |  ||  |                                                           
TTATATGTGAGATATGGTTTGCTGTTTCATGGGTTCTTGATCAGTTCCCTAAATGGTACCCTATCGAGCGAGAAACGTACTTGGACCGACTCTCATTAAGgtacttacatcttgtgggttattacacttggaaatgttaaaactttgttttggggatataat---ccttattttttttgtttgcag----------------------------------------------------------

upper sequence: GLYMA08G15380.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv07s0031g02060.t01 (Vitis vinifera), 5'ss of exon 6
TCATCTGTGAAATATGGTTTGCTGTATCATGGATAATGGATCAGTTTCCAAAATGGTACCCAATACAGCGAGAAACATACCTTGATCGTCTGTCACTCAGgtaattgagcctacctaccatatctggtgatttttatttct-tgatttgcatttattctgtacccaagtatatctcattctaattttcacgcttaaaagtcctactttcttgctcaagattggctttttacattgcggcag
| || |||||||||||||||||| ||||||||||  |||||||||||||||||||||  ||| |||  |||||||||||||||||||| || ||||| |||||| |  ||| |||  | | || || |  |  | |||| |  ||  ||   || |  |||   ||||   |||   | ||   ||  |  || |                                              
TTATATGTGAAATATGGTTTGCTATATCATGGATTCTGGATCAGTTTCCAAAATGGTGTCCAGTACGTCGAGAAACATACCTTGATCGGCTCTCACTAAGgtaactaggccaaccatcta-atttgat--tcatcatttttgcgaagtggtcttctgatgtgttcaagctcatcatctgctc-cttaaattctcag---------------------------------------------