1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TGATGATAACACTATAGACTTCATTGGTCATGCTTTGGCGCTTCATAGTGATGATCGCTACTTGGCTGAGCCAGCACTGGACACTGTGAAGAGAATGAAGgtaagtttactgggttattatgcacttgtaatttattctcagtcgtggattcttcttaattgaaaatttcttctgttccatttggttcccattagctatattttgtttcctacttgtag
species | Glycine max |
transcript | GLYMA08G13300.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CAGCACTGGACACTGTGAAGAGAATGAAG TTATATGCAGAGTCTCTTGCACGCTTTCAAGGAGGGTCACCTTACATATATEST: gi|207734492|gb|GD712443.1|GD712443
genomic: CAGCACTGGACACTGTGAAGAGAATGAAGgtaagtttac ... ctacttgtagTTATATGCAGAGTCTCTTGCACGCTTTCAAGGAGGGTCACCTTACATATAT
EST: ATGATCGCTACTTGGCTGAGCCAGCACTGGACACTGTGAAGAGAATGAAG TTATATGCAGAGTCTCTTGCACGCTTTCAAEST: gi|163927330|gb|EH040145.1|EH040145
genomic: ATGATCGCTACTTGGCTGAGCCAGCACTGGACACTGTGAAGAGAATGAAGgtaagtttac ... ctacttgtagTTATATGCAGAGTCTCTTGCACGCTTTCAA
EST: ATGATCGCTACTTGGCTGAGCCAGCACTGGACACTGTGAAGAGAATGAAG TTATATGCAGAGTCTCTTGCACGCTTTCAAGGAGGGTCACCTTACATATATEST: gi|151394091|gb|EV263962.1|EV263962
genomic: ATGATCGCTACTTGGCTGAGCCAGCACTGGACACTGTGAAGAGAATGAAGgtaagtttac ... ctacttgtagTTATATGCAGAGTCTCTTGCACGCTTTCAAGGAGGGTCACCTTACATATAT
EST: ATGATCGCTACTTGGCTGAGCCAGCACTGGACACTGTGAAGAGAATGAAG TTATATGCAGAGTCTCTTGCACGCTTTEST: gi|192326977|gb|FK019239.1|FK019239
genomic: ATGATCGCTACTTGGCTGAGCCAGCACTGGACACTGTGAAGAGAATGAAGgtaagtttac ... ctacttgtagTTATATGCAGAGTCTCTTGCACGCTTT
EST: ATGATCGCTACTTGGCTGAGCCAGCACTGGACACTGTGAAGAGAATGAAG TTATATGCAGAGTCTCTTGCACGCTTTCAAGGAGGGTCACCTTACATATATEST: gi|4283991|gb|AI440725.1|AI440725
genomic: ATGATCGCTACTTGGCTGAGCCAGCACTGGACACTGTGAAGAGAATGAAGgtaagtttac ... ctacttgtagTTATATGCAGAGTCTCTTGCACGCTTTCAAGGAGGGTCACCTTACATATAT
EST: ATGATCGCTACTTGGCTGAGCCAGCACTGGACACTGTGAAGAGAATGAAG TTATATGCAGAGTCTCTTGCACGCTTTCAAGGAGGGTCACCTTACATATATEST: gi|192328654|gb|FK023154.1|FK023154
genomic: ATGATCGCTACTTGGCTGAGCCAGCACTGGACACTGTGAAGAGAATGAAGgtaagtttac ... ctacttgtagTTATATGCAGAGTCTCTTGCACGCTTTCAAGGAGGGTCACCTTACATATAT
EST: ATGATCGCTACTTGGCTGAGC-AGCACTGGACACTGTGA-GAGA-TGA-G T-ATATGCAGAGTCTCTTGCACGEST: gi|24136625|gb|BU927135.1|BU927135
genomic: ATGATCGCTACTTGGCTGAGCCAGCACTGGACACTGTGAAGAGAATGAAGgtaagtttac ... ctacttgtagTTATATGCAGAGTCTCTTGCACG
EST: ATGATCGCTACTTGGCTGAGCCAGCACTGGACACTGTGAAGAGAATGAAG TTATATGCAGAGTCTCTTGCACGCTTTCAAGGAGGGTCACCTTACATATATEST: gi|151407978|gb|EV277793.1|EV277793
genomic: ATGATCGCTACTTGGCTGAGCCAGCACTGGACACTGTGAAGAGAATGAAGgtaagtttac ... ctacttgtagTTATATGCAGAGTCTCTTGCACGCTTTCAAGGAGGGTCACCTTACATATAT
EST: ATGATCGCTACTTGGCTGAGCCAGCACTGGACACTGTGAAGAGAATGAAG TTATATGCAGAGTCTCTTGCACGCTTTCAAGGAGGGTCACCTTACATATATEST: gi|151411945|gb|EV281756.1|EV281756
genomic: ATGATCGCTACTTGGCTGAGCCAGCACTGGACACTGTGAAGAGAATGAAGgtaagtttac ... ctacttgtagTTATATGCAGAGTCTCTTGCACGCTTTCAAGGAGGGTCACCTTACATATAT
EST: ATGATCGCTACTTGGCTGAGCCAGCACTGGACACTGTGAAGAGAATGAAG TTATATGCAGAGTCTCTTGCACGCTTTEST: gi|254321748|gb|GR825065.1|GR825065
genomic: ATGATCGCTACTTGGCTGAGCCAGCACTGGACACTGTGAAGAGAATGAAGgtaagtttac ... ctacttgtagTTATATGCAGAGTCTCTTGCACGCTTT
EST: ATGATCGCTACTTGGCTGAGCCAGCACTGGACACTGTGAAGAGAATGAAG TTATATGGAGAGTCTCTTGCACGCTTT
genomic: ATGATCGCTACTTGGCTGAGCCAGCACTGGACACTGTGAAGAGAATGAAGgtaagtttac ... ctacttgtagTTATATGCAGAGTCTCTTGCACGCTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATGATAACACTATAGACTTCATTGGTCATGCTTTGGCGCTTCATAGTGATGATCGCTACTTGGCTGAGCCAGCACTGGACACTGTGAAGAGAATGAAGgtaagtttactgggttattatgcacttgtaatttattctcagtcgtggattcttcttaattgaaaatttcttctgttccatttggttcccattagctatattttgtttcctacttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA