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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACTAACATTTTGATTCTTTTCGCATCTACAgttgcgtaaggttgctcaccaaggatgtgtcaaccgtatacgctccatgccacaaaatcctcatatatgtgcagcttgggccgataccggtcatgtacag...

Basic information

species Glycine max
transcript GLYMA08G11020.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G11020.1 (Glycine max), 5'ss of exon 6
lower sequence: AT2G19540.1 (Arabidopsis thaliana), 5'ss of exon 5
TACTAACATTTTGATTCTTTTCGCATCTACAgttgcgtaaggttgctcaccaaggatgtgtcaaccgtatacgctccatgccacaaaatcctcatatatgtgcagcttgggccgataccggtcatgtacag---------------------------------------------------------------------------------------------
                               ||| || | |||||||||||| |||||||| |||||||||||  | |||||||||||  ||||||| ||||   ||||||| ||| | ||||||||||||                                                                                             
-------------------------------GTT-CGAAGGGTTGCTCACCATGGATGTGTTAACCGTATACGTGCAATGCCACAAAACTCTCATATCTGTGTCTCTTGGGCAGATTCTGGTCATGTACAGgtaagattatatttttgtctactttcacagcttgggtgtctttttttgtatgtgtctttgttaatgtggattagcttttgtgtttcttgacag