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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATCATGGGTACACCAAATGAAGACACATGGCCTGGAGTGACATCATTGCCTGATTTTAAATCAGCCTTCCCCAAATGGCAGCCTAAGgtaattaaatggattttgtcattactataaaaatttagaatttaaccttattttgtactttgcag

Basic information

species Glycine max
transcript GLYMA08G08330.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G08330.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv15s0045g00310.t01 (Vitis vinifera), 5'ss of exon 7
AATCATGGGTACACCAAATGAAGACACATGGCCTGGAGTGACATCATTGCCTGATTTTAAATCAGCCTTCCCCAAATGGCAGCCTAAGgtaattaa-------------atggattttgtcattactataaaaatttagaatttaaccttat----tttgtactttgcag
  |  |||| ||||||||||| || |||||||| |||||||| || |||||||||||||| || ||||| || || ||||  |||||||||| |               ||  || |  | |||  |   |   || | |  || |  || |      | ||||||||||
GGTATTGGGCACACCAAATGAGGATACATGGCCAGGAGTGACTTCTTTGCCTGATTTTAAGTCTGCCTTTCCTAAGTGGCCTCCTAAGgtaaatgggttttgcatgtgcatctatctcatgatttttcatattgttgaaagattcatattgtgcttcctctactttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120531799|gb|EH259932.1|EH259932
EST:     TGACATCATTGCCTGATTTTAAATCAGCCTTCCCCAAATGGCAGCCTAAG                         GACCTGAAAATTGTGGTTCCAAATCTCAAGCCAGCTGGTCTTGATCTTCTT
genomic: TGACATCATTGCCTGATTTTAAATCAGCCTTCCCCAAATGGCAGCCTAAGgtaattaaat ... tactttgcagGACCTGAAAATTGTGGTTCCAAATCTCAAGCCAGCTGGTCTTGATCTTCTT
EST: gi|192318183|gb|FK007213.1|FK007213
EST:     TGACATCATTGCCTGATTTTAAATCAGCCTTCCCCAAATGGCAGCCTAAG                         GACCTGAAAATTGTGGTTCCAAATCTCAAGCCAGCTGGTCTTGATCTTCTT
genomic: TGACATCATTGCCTGATTTTAAATCAGCCTTCCCCAAATGGCAGCCTAAGgtaattaaat ... tactttgcagGACCTGAAAATTGTGGTTCCAAATCTCAAGCCAGCTGGTCTTGATCTTCTT
EST: gi|31307986|gb|CD393189.1|CD393189
EST:     TGACATCATTGCCTGATTTTAAATCAGCCTTCCCCAAATGGCAGCCTAAG                         GACCTGAAAATTGTGGTTCCAAATCTCAAGCCAGCTGGTCTTGATCTTCTT
genomic: TGACATCATTGCCTGATTTTAAATCAGCCTTCCCCAAATGGCAGCCTAAGgtaattaaat ... tactttgcagGACCTGAAAATTGTGGTTCCAAATCTCAAGCCAGCTGGTCTTGATCTTCTT
EST: gi|193372998|gb|FK333862.1|FK333862
EST:     TGACATCATTGCCTGATTTTAAATCAGCCTTCCCCAAATGGCAGCCTAAG                         GACCTGAAAATTGTGGTTCCAAATCTCAAGCCAGCTGGTCTTGATCTTCTT
genomic: TGACATCATTGCCTGATTTTAAATCAGCCTTCCCCAAATGGCAGCCTAAGgtaattaaat ... tactttgcagGACCTGAAAATTGTGGTTCCAAATCTCAAGCCAGCTGGTCTTGATCTTCTT
EST: gi|192318154|gb|FK007212.1|FK007212
EST:     TGACATCATTGCCTGATTTTAAATCAGCCTTCCCCAAATGGCAGCCTAAG                         GACCTGAAAATTGTGGTTCCAAATCTCAAGCCAGCTGGTCTTGATCTTCTT
genomic: TGACATCATTGCCTGATTTTAAATCAGCCTTCCCCAAATGGCAGCCTAAGgtaattaaat ... tactttgcagGACCTGAAAATTGTGGTTCCAAATCTCAAGCCAGCTGGTCTTGATCTTCTT
EST: gi|18039329|gb|BM307623.1|BM307623
EST:     TGACATCATTGCCTGATTTTAAATCAGCCTTCCCCAAATGGCAGCCTAAG                         GACCTGAAAATTGTGGTTCCAAATCTCAAGCCAGCTGGTCTTGATCTTCTT
genomic: TGACATCATTGCCTGATTTTAAATCAGCCTTCCCCAAATGGCAGCCTAAGgtaattaaat ... tactttgcagGACCTGAAAATTGTGGTTCCAAATCTCAAGCCAGCTGGTCTTGATCTTCTT
EST: gi|11411903|gb|BF423914.1|BF423914
EST:     TGACATCATTGCCTGATTTTAAATCAGCCTTCCCCAAATGGCACCCTAAG                         GACCTGAAAATTGTGGTTCCAAATCTCAAGCCAGCTGGTCTTGATCTTCTT
genomic: TGACATCATTGCCTGATTTTAAATCAGCCTTCCCCAAATGGCAGCCTAAGgtaattaaat ... tactttgcagGACCTGAAAATTGTGGTTCCAAATCTCAAGCCAGCTGGTCTTGATCTTCTT
EST: gi|22931456|gb|BU548595.1|BU548595
EST:     TGACATCATTGCCTGATTTTAAATCAGCCTTCCCCAAATGGCAGCCTAAG                         GACCTGAAAATTGTGGTTCCAAATCTCAAGCCAGCTGGTCTTGATCTTCTT
genomic: TGACATCATTGCCTGATTTTAAATCAGCCTTCCCCAAATGGCAGCCTAAGgtaattaaat ... tactttgcagGACCTGAAAATTGTGGTTCCAAATCTCAAGCCAGCTGGTCTTGATCTTCTT
EST: gi|22929863|gb|BU547002.1|BU547002
EST:     CCAAATGGCAGCCTAAG                         GACCTGAAAATTGTGGTTCCAAATCTCAAGCCAGCTGGTCTTGATCTTCTT
genomic: CCAAATGGCAGCCTAAGgtaattaaat ... tactttgcagGACCTGAAAATTGTGGTTCCAAATCTCAAGCCAGCTGGTCTTGATCTTCTT
EST: gi|11688056|gb|BF595732.1|BF595732
EST:     TGACATCATTGCCTGATTTTAAATCAGCCTTCCCCAAATGGCAGCCTAAG                         GACCTGAAAATTGTGGTTCCAAATCTCAAGCCAGCTGGTCTTGATCTTCTT
genomic: TGACATCATTGCCTGATTTTAAATCAGCCTTCCCCAAATGGCAGCCTAAGgtaattaaat ... tactttgcagGACCTGAAAATTGTGGTTCCAAATCTCAAGCCAGCTGGTCTTGATCTTCTT
EST: gi|208042526|gb|GD840952.1|GD840952
EST:     TGACATCATTGCCTGATTTTAAATCAGCCTTCCCCAAATGGCAGCCTAAG                         GACCTGAAAATTGTGGTTCCAAATCTCAAGCCAGCTGGTCTTGATCTTCTT
genomic: TGACATCATTGCCTGATTTTAAATCAGCCTTCCCCAAATGGCAGCCTAAGgtaattaaat ... tactttgcagGACCTGAAAATTGTGGTTCCAAATCTCAAGCCAGCTGGTCTTGATCTTCTT