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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCAGATCTATATTCCTGTCATAAACTGGTTTCTCTTGGCTGTTTCTTTGGTGCTTGTCTGTTCTATATCCAGCATTGATGAGATTGGAAATGCATATGgtaatgatttatttcaatttctctatttttatttacacagataattttgttaaatttatcagccatatacacatattgcatgtcaaattgtaaataatgt...

Basic information

species Glycine max
transcript GLYMA08G07720.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G07720.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv12s0142g00170.t01 (Vitis vinifera), 5'ss of exon 5
GGCCAGATCTATATTCCTGTCATAAACTGGTTTCTCTTGGCTGTTTCTTTGGTGCTTGTCTGTTCTATATCCAGCATTGATGAGATTGGAAATGCATATGgtaatgatttatttcaatttctctatttttatttacacagataattttgt-taaatttatcagccatatacacatat-tgcatgtcaaattgtaaataatgt
|||||||| |||||||| |||||||||||||||||  |||  ||||  |||||| | |||   | ||| || |   |  |||||||||||||||||||||||||   ||  || |||  |  || |  ||  | | | |  ||  | | | || || ||| |   ||||| | |||| |  || |     |||    | | |
GGCCAGATTTATATTCCAGTCATAAACTGGTTTCTGCTGGTGGTTTGCTTGGTGTTAGTCATCTTTATCTCAAATGTCAATGAGATTGGAAATGCATATGgtaa-acttctttccaacctacctttcattcataatagatctatatatatatatatatat-atatatatatatatatatatatatgctggtgttttcatttt

upper sequence: GLYMA08G07720.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv12s0142g00170.t01 (Vitis vinifera), 5'ss of exon 5
GGCCAGATCTATATTCCTGTCATAAACTGGTTTCTCTTGGCTGTTTCTTTGGTGCTTGTCTGTTCTATATCCAGCATTGATGAGATTGGAAATGCATATGgtaatgatttatttcaatttctctatttttatttacacagataattttgt-taaatttatcagccatatacacatat-tgcatgtcaaattgtaaataatgt
|||||||| |||||||| |||||||||||||||||  |||  ||||  |||||| | |||   | ||| || |   |  |||||||||||||||||||||||||   ||  || |||  |  || |  ||  | | | |  ||  | | | || || ||| |   ||||| | |||| |  || |     |||    | | |
GGCCAGATTTATATTCCAGTCATAAACTGGTTTCTGCTGGTGGTTTGCTTGGTGTTAGTCATCTTTATCTCAAATGTCAATGAGATTGGAAATGCATATGgtaa-acttctttccaacctacctttcattcataatagatctatatatatatatatatat-atatatatatatatatatatatatgctggtgttttcatttt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6072797|gb|AW102184.1|AW102184
EST:     GGTGCTTGTCTGTTCTATATCCAGCATTGATGAGATTGGAAATGCATATG                         GCATTGCTGAGCTGGGGGTGATGATGATGACCACTATTTTAGTAACTCTTG
genomic: GGTGCTTGTCTGTTCTATATCCAGCATTGATGAGATTGGAAATGCATATGgtaatgattt ... cgtctttcagGCATTGCTGAGCTGGGGGTGATGATGATGACCACTATTTTAGTAACTCTTG