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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAGATGATACAGTTGACTTTATTGGTCATGCCTTGGCACTTCATCGTGATGATAATTACTTGGATGAGCCAGCCAAGGATTTTGTAGACAGAGTTAAGgtacttatttacaaattattccgtaagcttttgtacagtaccaaaactataatcatatgccacctgaatatagatctcaaagtcaattgctgtttacttg...

Basic information

species Glycine max
transcript GLYMA08G07250.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G07250.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os03g16900.1 (Oryza sativa), 5'ss of exon 6
GGAAGATGATACAGTTGACTTTATTGGTCATGCCTTGGCACTTCATCGTGATGATAATTACTTGGATGAGCCAGCCAAGGATTTTGTAGACAGAGTTAAGgtacttatttacaaattattccgtaagcttttgtacagtaccaaaactataatcatatgccacctgaatatagatctcaaagtcaattg-ctgtttacttg--
 || ||||| ||||| ||||||||||| ||||| |||||||||||||| |||||||| ||  | ||||| || || |  ||   |||  | ||  | ||||||||   |  |   | | ||   ||    ||  |   | |  | | | |  |||  ||       || |  |||       ||||||  || |  ||     
CGAGGATGACACAGTGGACTTTATTGGGCATGCATTGGCACTTCATCGAGATGATAACTATCTCGATGAACCTGCAATTGACACTGTGAAAAGGATGAAGgtactatatgccccctaactcaagaaaacatttgagtctgcgtatattctgctcac-tgttga--aaacaacgatgctttgatcaattctctatgcaccacaa

upper sequence: GLYMA08G07250.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv03s0017g00490.t01 (Vitis vinifera), 5'ss of exon 5
GGAAGATGATACAGTTGACTTTATTGGTCATGCCTTGGCACTTCATCGTGATGATAATTACTTGGATGAGCCAGCCAAGGATTTTGTAGACAGAGTTAAGgtact-----tatttacaaattattccgtaa-gcttttgtacagtaccaaaactataatcatatgccacctgaatatagatctcaaagtcaattgctgtttacttg
||| ||||||||| ||||||| ||||||||  | |||||||||||| ||||||||| |||||||||||||||||| | ||| |||||| | ||| | |||||        ||||     ||  ||  | |  | | |||   | |      ||| || ||||  |     ||    | | ||| ||    ||||    |  |    
GGAGGATGATACAATTGACTTCATTGGTCACTCATTGGCACTTCATAGTGATGATAGTTACTTGGATGAGCCAGCTATGGAATTTGTAAAGAGAATGAAGgtgaaaatagtattcctgcatacttttgaattgatgttgataaatgtttctactgtattcattcgttgagtgttatttgttcttaag--taattttcttgga----