Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTTGGAACGCCGCAGAGAGGAACTTGAACAACTACTCCTTGCTGAGAGAGTTTAAAACATTTTGAACGTAGTGCTGAAATTAATCTGTAGTGAAGgtaagtctactgcaagcctatgaatctctgtttatgttagtaatgcttacagaattgctagttcattctttgtatattgggttatgttcttagatgtagg...

Basic information

species Glycine max
transcript GLYMA08G07230.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22928095|gb|BU545234.1|BU545234
EST:     GAGAGTTTAAAACATTTTGAACGTAGTGCTGAAATTAATCTGTAGTGAAG                         GTACACTTTAATTTTCCTCCTGGGAATTGGGAGTAATAGAGGCAACATATT
genomic: GAGAGTTTAAAACATTTTGAACGTAGTGCTGAAATTAATCTGTAGTGAAGgtaagtctac ... aatgctccagGTACACTTTAATTTTCCTCCTGGGAATTGGGAGTAATAGAGGCAACATATT
EST: gi|193711918|gb|FK648339.1|FK648339
EST:     GAGAGTTTAAAACATTTTGAACGTAGTGCTGAAATTAATCTGTAGTGAAG                         GTACACTTTAATTTTCCTCCTGGGAATTGGGAGTAATAGAGGCAACATATT
genomic: GAGAGTTTAAAACATTTTGAACGTAGTGCTGAAATTAATCTGTAGTGAAGgtaagtctac ... aatgctccagGTACACTTTAATTTTCCTCCTGGGAATTGGGAGTAATAGAGGCAACATATT
EST: gi|17400648|gb|BM177430.1|BM177430
EST:     GAGAGTTTAAAACATTTTGAACGTAGTGCTGAAATTAATCTGTAGTGAAG                         GTACACTTTAATTTTCCTCCTGGGAATTGGGAGTAATAGAGGCAACATATT
genomic: GAGAGTTTAAAACATTTTGAACGTAGTGCTGAAATTAATCTGTAGTGAAGgtaagtctac ... aatgctccagGTACACTTTAATTTTCCTCCTGGGAATTGGGAGTAATAGAGGCAACATATT