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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCGTAAGCGAAAACTTGATGTGGCCACCATCACACAAGGGGAGACCAGATTTTTCAGTGTGTTGATGCTTGCATGGGgtaattataaattactgtcaccatagtcgtgttttggaaacgagtgaatgtgaaaaagcatctaagttacttgtgtcagcatctggttctggccatgatattcgccgtaacatatttgaaaattttaattttatttcag

Basic information

species Glycine max
transcript GLYMA08G06300.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G06300.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv00s0181g00250.t01 (Vitis vinifera), 5'ss of exon 6
GCCGTAAGCGAAAACTTGATGTGGCCACCATCACACAAGGGGAGACCAGATTTTTCAGTGTGTTGATGCTTGCATGGGgta-attataaattactgtcacca---ta-gtcgtgttttggaaac---gagtgaatgtgaaaaagcatct---aagttacttgtgtcagcatctggttctgg-----ccatgatattcgccgtaacatatttgaa-aattttaat---tttatttcag---------------------------
| | |||| |   ||| |||||||| ||||||   ||||||||||||| |||||| || || ||||||||||| |||||||      ||||| |   |||     || | | |  | | | |||    ||||| |||  ||  | || |   |    |  | | | || || ||  |||||     | |  |||  |    ||    |||||    ||||| ||   | || ||                              
GTCATAAGTGTTCACTGGATGTGGCTACCATCTTGCAAGGGGAGACCAAATTTTTTAGCGTCTTGATGCTTGCTTGGGgtatgaccaaaatttccaccacttgtttatgccatactcttggaactgcaagtgactgttgaactggatttttaagacaagctttctaagaatatgcctctggatttactagaataagctttctagtggatttgtttgattttgatagctctactttgccttactgacagaattttagtattccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151397505|gb|EV267378.1|EV267378
EST:     CATCACACAAGGGGAGACCAGATTTTTCAGTGTGTTGATGCTTGCATGGG                         GTCTGGTTGCTGATATTGATATCGAGTCTGAAAAGTATAGGTGGATGGGAA
genomic: CATCACACAAGGGGAGACCAGATTTTTCAGTGTGTTGATGCTTGCATGGGgtaattataa ... tttatttcagGTCTGGTTGCTGATATTGATATCGAGTCTGAAAAGTATAGGTGGATGGGAA
EST: gi|19271300|gb|BM887556.1|BM887556
EST:     CATCACACAAGGGGAGACCAGATTTTTCAGTGTGTTGATGCTTGCATGGG                         GTCTGGTTGCTGATATTGATATCGAGTCTGAAAAGTATAGGTGGATGGGAA
genomic: CATCACACAAGGGGAGACCAGATTTTTCAGTGTGTTGATGCTTGCATGGGgtaattataa ... tttatttcagGTCTGGTTGCTGATATTGATATCGAGTCTGAAAAGTATAGGTGGATGGGAA