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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTAATAGTATGTGAGCTACTTAAAGCAAACTTGTATGAGTTTCATAAATTTAATAGAGAATCAGGTGGTGAAGTGTACTTTACAATGCCAAGATTGCAGgtttgtggtgtgctatttacttcatgatgtttaattttcatcttatctattctcattgcaaactcttctgaattgatgtgtgcag

Basic information

species Glycine max
transcript GLYMA08G06160.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G06160.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os03g51020.1 (Oryza sativa), 5'ss of exon 4
GTTAATAGTATGTGAGCTACTTAAAGCAAACTTGTATGAGTTTCATAAATTTAATAGAGAATCAGGTGGTGAAGTGTACTTTACAATGCCAAGATTGCAGgtttg--tggtgtgctatttacttc--atgatgtttaattttcatcttatctattctcattgcaaactct-tctgaattgatgtgtgcag----------------------------------
| | ||||| |||||||| || || ||||| |||||||| ||||| || || || ||||||||||| || || || || || |||||||||||| ||||||| |   | |   |||| |    ||   | ||| | | |  |  | |||       | | || | ||  | |   ||||  ||||  ||                                   
GCTTATAGTCTGTGAGCTTCTGAAGGCAAATTTGTATGAATTTCAAAAGTTCAACAGAGAATCAGGAGGCGAGGTCTATTTCACAATGCCAAGACTGCAGgtattactagctagctaataggatccagtaatggtgattaatgtttttactctcagtaaatggacacaatataccaatttttgtg-acaataattgattttccttttgcgtaccctttctgcag

upper sequence: GLYMA08G06160.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G015073_T01 (Zea mays), 5'ss of exon 4
GTTAATAGTATGTGAGCTACTTAAAGCAAACTTGTATGAGTTTCATAAATTTAATAGAGAATCAGGTGGTGAAGTGTACTTTACAATGCCAAGATTGCAGgtttgtggtgtgct-atttac----ttcat-gatgtttaattttcatcttatctattctcattgcaaactcttctgaattgatgtgtgcag----------------------------------
| | ||||| ||||| || || || |||||  ||||||||||||| ||||| || ||||||||||| ||||| || ||||| |||||||||||| | ||||| | || | | |  | |||     | |||  || || | ||    | | |       | || | | |     ||  | |  |       |                                  
GCTGATAGTCTGTGAACTTCTGAAGGCAAATCTGTATGAGTTTCAGAAATTCAACAGAGAATCAGGGGGTGAGGTTTACTTCACAATGCCAAGACTCCAGgtatttgttttaccgagttatgatgtccattaatattgacttaatgtttcacaaccaataatggaatatgagactacaatttttcacattgattgaatattttttctttgttgtgcccttggcag

upper sequence: GLYMA08G06160.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G181002_T01 (Zea mays), 5'ss of exon 4
GTTAATAGTATGTGAGCTACTTAAAGCAAACTTGTATGAGTTTCATAAATTTAATAGAGAATCAGGTGGTGAAGTGTACTTTACAATGCCAAGATTGCAGgtttgtggtgtgctatttacttca-tgatgtttaattttcatcttatctattctcattgcaaactcttctgaattgatgtgtgcag------------------------------------
| | ||||| ||||| || || || |||||  |||| |||||||| ||||| || ||||||||||| ||||| || ||||| |||||||||||| ||||||| | |  || ||||  |  | || | ||||| | || |  | | |       | |    | ||  ||||  | |  |      ||                                    
GCTGATAGTCTGTGAACTTCTGAAGGCAAATCTGTACGAGTTTCAGAAATTCAACAGAGAATCAGGGGGTGAGGTTTACTTCACAATGCCAAGACTGCAGgtat-tactgagctaggttatccactaatgttgacttattgtttgactaccagtaacaaaacacgattctacaatttttcacatagatttgatatttttttctttgttgtaccccttggcag

upper sequence: GLYMA08G06160.1 (Glycine max), 5'ss of exon 6
lower sequence: AT3G17750.1 (Arabidopsis thaliana), 5'ss of exon 5
GTTAATAGTATGTGAGCTACTTAAAGCAAACTTGTATGAGTTTCATAAATTTAATAGAGAATCAGGTGGTGAAGTGTACTTTACAATGCCAAGATTGCAGgtttgtggtgtgctatttacttcatgatgtttaattttcatcttatctattctcattgcaaactcttctgaattgatgt---gtgcag
||||||||||||||| || || || ||||||||||||||||| || || |||||||| |||||||| || || || || || || |||||||||||||||||| |       || |     |||| | |||| || |   | ||  ||  ||||    ||   |||||| |||  |  |   ||||||
GTTAATAGTATGTGAACTTCTCAAGGCAAACTTGTATGAGTTCCAAAAGTTTAATAGGGAATCAGGGGGAGAGGTTTATTTCACTATGCCAAGATTGCAGgttagccaacatctttactactcatca-gttttatgtatgttttcactgctctct---cattttcttctaaatcaaaatattgtgcag

upper sequence: GLYMA08G06160.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G73450.1 (Arabidopsis thaliana), 5'ss of exon 4
GTTAATAGTATGTGAGCTACTTAAAGCAAACTTGTATGAGTTTCATAAATTTAATAGAGAATCAGGTGGTGAAGTGTACTTTACAATGCCAAGATTGCAGgtttgtggtgtgctatttacttcatgatgtttaattttcatct-tatctattctcattgcaaactcttctgaattgatgtgtgcag
| |||| |||||||| || ||||| || ||  | || ||||| || |||||||| |||||||||||||||||||| || || || |||||||| ||||||||||||      || ||  | | |  ||   | ||    || | ||| ||| |   |    | |||||  | |  | | ||| |||
GCTAATTGTATGTGAACTTCTTAAGGCCAATCTATACGAGTTCCACAAATTTAACAGAGAATCAGGTGGTGAAGTTTATTTCACGATGCCAAGGTTGCAGgtttgt---ccact-ttatcattaccatacatcatagatatgtatatgtatccgattcctgatctctttgggaccgttctgtacag

upper sequence: GLYMA08G06160.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G73460.1 (Arabidopsis thaliana), 5'ss of exon 4
GTTAATAGTATGTGAGCTACTTAAAGCAAACTTGTATGAGTTTCATAAATTTAATAGAGAATCAGGTGGTGAAGTGTACTTTACAATGCCAAGATTGCAGgtttgtggtgtgctatttacttcatgatgtttaattttcatcttatctattctcattgcaaactcttctgaattgatgtgtgcag
| |||| |||||||| || ||||| || ||  | || || || || |||||||| |||||||||||||||||||| || || || |||||||||||||||||||||     ||| |   | | |  ||  |||||    || | ||  || |   ||  || |||||  | || | | ||| |||
GCTAATTGTATGTGAACTTCTTAAGGCCAATCTATACGAATTCCACAAATTTAACAGAGAATCAGGTGGTGAAGTTTATTTCACGATGCCAAGATTGCAGgtttgt---ccgct-tcatcattaacattcttaatagatatgt-ataaatccgagttctaatctctttgggatcgttctgtacag

upper sequence: GLYMA08G06160.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv01s0011g01590.t01 (Vitis vinifera), 5'ss of exon 10
GTTAATAGTATGTGAGCTACTTAAAGCAAACTTGTATGAGTTTCATAAATTTAATAGAGAATCAGGTGGTGAAGTGTACTTTACAATGCCAAGATTGCAGgtttgtggtgtgctatttacttcatgatgtttaattttcatcttatctattctcat-tgcaaact-cttctgaattgatgtgtgcag
 ||||| ||||| || || || || |||||||||||||||||||||||||||||||||||||| || || || || ||||| |||||||||||||||||||||  ||| ||   ||||      |||| | |   | || |  |  | || ||  | || || || ||| | ||||| | |||||||
ATTAATTGTATGCGAACTTCTCAAGGCAAACTTGTATGAGTTTCATAAATTTAATAGAGAATCCGGAGGGGAGGTTTACTTCACAATGCCAAGATTGCAGgtt-atggagttacatttttaaactgatatctttctctcctactgac-atgctggtatgtaacctgcttttaaattgttctgtgcag

upper sequence: GLYMA08G06160.1 (Glycine max), 5'ss of exon 6
lower sequence: PP1S47_312V6.1 (Physcomitrella patens), 5'ss of exon 5
GTTAATAGTATGTGAGCTACTTAAAGCAAACTTGTATGAGTTTCATAAATTTAATAGAGAATCAGGTGGTGAAGTGTACTTTACAATGCCAAGATTGCAGgtttgtggtgtgctatttacttc-atgatgtt--taattttcatcttat-------------ctattctcattgcaaactcttctgaattgatgtgtgcag
||| ||||| |||||| |||||  ||| || ||||| ||||| || ||||  || ||||||||||||||||| ||||||||||| |||||  |  | ||||| | |         || |   | ||| ||||  || || |  |||||               || | |  ||| ||      ||  || ||||| |  | 
GTTCATAGTTTGTGAGTTACTTCGAGCTAATTTGTACGAGTTCCACAAATACAACAGAGAATCAGGTGGTGAGGTGTACTTTACGATGCCCCGTCTTCAGgtgtatttcacatccttgatgccgatgttgttcatagttctgctcttacaagcataatattattactttacttgtaagtgaacctagatagatgtctata-

upper sequence: GLYMA08G06160.1 (Glycine max), 5'ss of exon 6
lower sequence: PP1S381_39V6.1 (Physcomitrella patens), 5'ss of exon 12
GTTAATAGTATGTGAGCTACTTAAAGCAAACTTGTATGAGTTTCATAAATTTAATAGAGAATCAGGTGGTGAAGTGTACTTTACAATGCCAAGATTGCAGgtttgtggtgtgctatttacttc--atgatgtttaa---ttttcatcttatctattctcattgcaaactcttctg-aattgatgtgt-gcag--------
||| || || |||||| |||||  ||| ||| | || |||||||||||||  || |||||||||||||| || ||||||||||| |||||  |  | ||||| |||  | |  |  ||| | |  | | ||||||    ||||  ||||  ||||     |||  ||  |   |   |||||| | | | ||        
GTTCATCGTTTGTGAGTTACTTCGAGCTAACCTATACGAGTTTCATAAATACAACAGAGAATCAGGTGGCGAGGTGTACTTTACGATGCCCCGTCTTCAGgtgtgttctctcatccttaatcccgacgttgtttacgtttttttctctttactatctgtgttgacaatccacttatgattgatttatagtagatttccct