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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAATAACATTGACTTCTACATGAACGGGCATGATCATTGTCTTGAGCACATTAGTGACACGGAGAGgtaaaattaaatgaattcatgtaattttttacaaggaacaaagtcaaagtaataatatatttatctgatagaggaacttgtttgcag

Basic information

species Glycine max
transcript GLYMA08G06090.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6502194|gb|AW203567.1|AW203567
EST:     TACATGAACGGGCATGATCATTGTCTTGAGCACATTAGTGACACGGAGAG                         CCCCATTCAGTTCCTGACTAGCGGGGCAGGGTCAAAGGCTTGGAGAGGAGA
genomic: TACATGAACGGGCATGATCATTGTCTTGAGCACATTAGTGACACGGAGAGgtaaaattaa ... ttgtttgcagCCCCATTCAGTTCCTGACTAGCGGGGCAGGGTCAAAGGCTTGGAGAGGAGA
EST: gi|16343572|gb|BI969167.1|BI969167
EST:     TACATGAACGGGCATGATCATTGTCTTGAGCACATTAGTGACACGGAGAG                         CCCCATTCAGTTCCTGACTAGCGGGGCAGGGTCAAAGGCTTGGAGAGGAGA
genomic: TACATGAACGGGCATGATCATTGTCTTGAGCACATTAGTGACACGGAGAGgtaaaattaa ... ttgtttgcagCCCCATTCAGTTCCTGACTAGCGGGGCAGGGTCAAAGGCTTGGAGAGGAGA
EST: gi|254331979|gb|GR843722.1|GR843722
EST:     TACATGAACGGGCATGATCATTGTCTTGAGCACATTAGTGACACGGAGAG                         CCCCATTCAGTTCCTGACTAGCGGGGCAGGGTCAAAGGCTTGGAGAGGAGA
genomic: TACATGAACGGGCATGATCATTGTCTTGAGCACATTAGTGACACGGAGAGgtaaaattaa ... ttgtttgcagCCCCATTCAGTTCCTGACTAGCGGGGCAGGGTCAAAGGCTTGGAGAGGAGA
EST: gi|31460751|gb|CD402779.1|CD402779
EST:     TACATGAACGGGCATGATCATTGTCTTGAGCACATTAGTGACACGGAGAG                         CCCCATTCAGTTCCTGACTAGCGGGGCAGGGTCAAAGGCTTGGAGAGGAGA
genomic: TACATGAACGGGCATGATCATTGTCTTGAGCACATTAGTGACACGGAGAGgtaaaattaa ... ttgtttgcagCCCCATTCAGTTCCTGACTAGCGGGGCAGGGTCAAAGGCTTGGAGAGGAGA
EST: gi|213598094|gb|DB977664.1|DB977664
EST:     TACATGAACGGGCATGATCATTGTCTTGAGCACATTAGTGACACGGAGAG                         CCCCATTCAGTTCCTGACTAGCGGGGCAGGGTCAAAGGCTTGGAGAGGAGA
genomic: TACATGAACGGGCATGATCATTGTCTTGAGCACATTAGTGACACGGAGAGgtaaaattaa ... ttgtttgcagCCCCATTCAGTTCCTGACTAGCGGGGCAGGGTCAAAGGCTTGGAGAGGAGA
EST: gi|192331088|gb|FK020308.1|FK020308
EST:     TACATGAACGGGCATGATCATTGTCTTGAGCACATTAGTGACACGGAGAG                         CCCCATTCAGTTCCTGACTAGCGGGGCAGGGTCAAAGGCTTGGAGAGGAGG
genomic: TACATGAACGGGCATGATCATTGTCTTGAGCACATTAGTGACACGGAGAGgtaaaattaa ... ttgtttgcagCCCCATTCAGTTCCTGACTAGCGGGGCAGGGTCAAAGGCTTGGAGAGGAGA
EST: gi|254331980|gb|GR843723.1|GR843723
EST:     TACATGAACGGGCATGATCATTGTCTTGAGCACATTAGTGACACGGAGAG                         CCCCATTCAGTTCCTGACTAGCGGGGCAGGGTCAAAGGCTTGGAGAGGAGA
genomic: TACATGAACGGGCATGATCATTGTCTTGAGCACATTAGTGACACGGAGAGgtaaaattaa ... ttgtttgcagCCCCATTCAGTTCCTGACTAGCGGGGCAGGGTCAAAGGCTTGGAGAGGAGA
EST: gi|9258428|gb|BE346575.1|BE346575
EST:     TACATGAACGGGCATGATCATTGTCTTGAGCACATTAGTGACACGGAGAG                         CCCCATTCAGTTCCTGACTAGCGGGGCAGGGTCAAAGGCTTGGAGAGGAGA
genomic: TACATGAACGGGCATGATCATTGTCTTGAGCACATTAGTGACACGGAGAGgtaaaattaa ... ttgtttgcagCCCCATTCAGTTCCTGACTAGCGGGGCAGGGTCAAAGGCTTGGAGAGGAGA