Sequence
atgc intronic sequence ATGC exonic sequenceTCCGTTCTCCCAAAAATTTCCAAATGCAGATCCATTGGCTCTTCGTTTGCTGGAAAGCCTACTTGCATTTGATCCTAAAGACCGTCCATCAGCTGAAGAGgttgatctcctatcacctatatataatttcattgataattacctaagagtatatttcattatttctgtcatgtttgtgatatcag
Basic information
species | Glycine max |
transcript | GLYMA08G05700.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G05700.1 (Glycine max), 5'ss of exon 6
lower sequence: AT3G18040.2 (Arabidopsis thaliana), 5'ss of exon 5
TCCGTTCTCCCAAAAATTTCCAAATGCAGATCCATTGGCTCTTCGTTTGCTGGAAAGCCTACTTGCATTTGATCCTAAAGACCGTCCATCAGCTGAAGAGgttgatctcctatcacctatatataatttcattgataatt----acctaagagtatatttcattatt-tctgtcatgtttgtgatatcag-----------------------
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TCCATTCACTCACAAATTTCCTCATGTAGACCCATTGGCCCTTCGCTTACTGCACCGTCTTCTTGCATTTGATCCCAAAGACCGTCCCTCAGCTGAAGAGgttagctcctctatacttgttttttctagcgtttccacttcaaaatttcagagcagtttcaatcgctctcagaaaaggaaacattatatatacatgtgtgtgtgtatatacag
upper sequence: GLYMA08G05700.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G18150.3 (Arabidopsis thaliana), 5'ss of exon 7
TCCGTTCTCCCAAAAATTTCCAAATGCAGATCCATTGGCTCTTCGTTTGCTGGAAAGCCTACTTGCATTTGATCCTAAAGACCGTCCATCAGCTGAAGAGgttgatctcctatcacctatatataatttcattgataattaccta-agagtatatttcattatttctgtcatgtttg----tgatatcag--
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CCCTTTCTCTCATAAATTCCCTAAAGCTGATCCTTTGGCTCTCCGCCTTCTGGAACGCCTGCTTGCCTTTGATCCGAAAGATCGTGCATCAGCTGAAGATgtaagtgagaagtaaatttgctttacttttcccttttgttttatacagaacgaaactc-ttatattcgtcgtttttgattttcatattacag
upper sequence: GLYMA08G05700.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv17s0000g02570.t01 (Vitis vinifera), 5'ss of exon 6
TCCGTTCTCCCAAAAATTTCCAAATGCAGATCCATTGGCTCTTCGTTTGCTGGAAAGCCTACTTGCATTTGATCCTAAAGACCGTCCATCAGCTGAAGAGgt--tgatc-----tccta-----tcacctatatataatttcattgataattacctaagagtatatttcattatttctgtcatgtttgtgatatcag--------------------------
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TCCCTTCTCACAAAAATTCCCTGATGCTGATCCGTTGGCTCTTCATCTAGTGGAACGTCTCCTTGCATTTGATCCTAAAGATCGTCCAACTGCTGAAGAGgtaatagttggtaattctaatatttcgctacttcaaaatttaaattaaaattgtaaagaaatataatctagttgatttgggaacactgtgcttcctaatatcattgcgtgtttatgttggcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151400964|gb|EV270778.1|EV270778EST: TGGAAAGCCTACTTGCATTTGATCCTAAAGACCGTCCATCAGCTGAAGAG GCATTATCTGATCCTTACTTCACTGGCTTGGCGAACATGGACCGCGAACCA
genomic: TGGAAAGCCTACTTGCATTTGATCCTAAAGACCGTCCATCAGCTGAAGAGgttgatctcc ... gtgatatcagGCATTATCTGATCCTTACTTCACTGGCTTGGCGAACATGGACCGCGAACCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCCGTTCTCCCAAAAATTTCCAAATGCAGATCCATTGGCTCTTCGTTTGCTGGAAAGCCTACTTGCATTTGATCCTAAAGACCGTCCATCAGCTGAAGAGgttgatctcctatcacctatatataatttcattgataattacctaagagtatatttcattatttctgtcatgtttgtgatatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA