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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGGAAAACGGTGGACCTGCACCAGAGGGAATTACTGACAAGATATATGAAAACACAACAACAATTAATGAGTACTTGATTGCTTCAGATCTGCCAGATgtactactcatgacctggcttcaaatattctccttctctttatttatccaccttgtttttaattaagactgtaatgtctttcatcaacctaaatcttgtttcccattctctatttgtcttcccag

Basic information

species Glycine max
transcript GLYMA08G04890.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G04890.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv01s0011g05370.t01 (Vitis vinifera), 5'ss of exon 7
TATGGAAAACGGTGGACCTGCACCAGAGGGAATTACTGACAAGATATATGAAAACACAACAACAATTAATGAGTACTTGATTGCTTCAGATCTGCCAGATgtactactcatgacctggcttcaaatattctccttctctttatttatccaccttgtttttaattaagactgtaatgtctttcatcaacctaaat-cttgtttcccatt-ctctatttgtcttcccag
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CATGGAAAATGGTGGACCTGCTCAAGAGGCAATTACTGATAAGATCTATGAGAACACAAAATCCATAAAGGAGTATATAATTGCAGAAGATCTTCCTGATgtattatctgcatcttaagct-gcatatccattttttcttgattgctgca-----------------agtgtggt----ttcatcgacttagattctcatttcacaatgttctatatgcactctag-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7588948|gb|AW704733.1|AW704733
EST:     AAAACACAACAACAATTAATGAGTACTTGATTGCTTCAGATCTGCCAGAT                         GTGGATATTACCTCAACAGGTGTTACAAGCTTTACAGGCCCCGGAGGACCA
genomic: AAAACACAACAACAATTAATGAGTACTTGATTGCTTCAGATCTGCCAGATgtactactca ... gtcttcccagGTGGATATTACCTCAACAGGTGTTACAAGCTTTACAGGCCCCGGAGGACCA
EST: gi|7146991|gb|AW508913.1|AW508913
EST:     AAAACACAACAACAATTAATGAGTACTTGATTGCTTCAGATCTGCCAGAT                         GTGGATATTACCTCAACAGGTGTTACAAGCTTTACAGGCCCCGGAGGACCA
genomic: AAAACACAACAACAATTAATGAGTACTTGATTGCTTCAGATCTGCCAGATgtactactca ... gtcttcccagGTGGATATTACCTCAACAGGTGTTACAAGCTTTACAGGCCCCGGAGGACCA
EST: gi|14259175|gb|BG882083.1|BG882083
EST:     AAAACACAACAACAATTAATGAGTACTTGATTGCTTNAGATCTGCCAGAT                         GTGGATATTACCTCAACAGGTGTTACAAGCTTTACAGGCCCCGGAGGACCA
genomic: AAAACACAACAACAATTAATGAGTACTTGATTGCTTCAGATCTGCCAGATgtactactca ... gtcttcccagGTGGATATTACCTCAACAGGTGTTACAAGCTTTACAGGCCCCGGAGGACCA
EST: gi|33390415|gb|CA853610.1|CA853610
EST:     AAAACACAACAACAATTAATGAGTACTTGATTGCTTCAGATCTGCCAGAT                         GTGGATATTACCTCAACAGGTGTTACAAGCTTTACAGGCCCCGGAGGACCA
genomic: AAAACACAACAACAATTAATGAGTACTTGATTGCTTCAGATCTGCCAGATgtactactca ... gtcttcccagGTGGATATTACCTCAACAGGTGTTACAAGCTTTACAGGCCCCGGAGGACCA
EST: gi|6501948|gb|AW203321.1|AW203321
EST:     AAAACACAACAACAATTAATGAGTACTTGATTGCTTCAGATCTGCCAGAT                         GTGGATATTACCTCAACAGGTGTTACAAGCTTTACAGGCCCCGGAGGACCA
genomic: AAAACACAACAACAATTAATGAGTACTTGATTGCTTCAGATCTGCCAGATgtactactca ... gtcttcccagGTGGATATTACCTCAACAGGTGTTACAAGCTTTACAGGCCCCGGAGGACCA
EST: gi|6567304|gb|AW234915.1|AW234915
EST:     AAAACACAACAACAATTAATGAGTACTTGATTGCTTCAGATCTGCCAGAT                         GTGGATATTACCTCAACAGGTGTTACAAGCTTTACAGGCCCCGGAGGACCA
genomic: AAAACACAACAACAATTAATGAGTACTTGATTGCTTCAGATCTGCCAGATgtactactca ... gtcttcccagGTGGATATTACCTCAACAGGTGTTACAAGCTTTACAGGCCCCGGAGGACCA
EST: gi|254323080|gb|GR839993.1|GR839993
EST:     AAAACACAACA-CAATTAATGAGTACTTGATTGCTTCAGATCTGCCAGAT                         GTGGATATTACCTCA
genomic: AAAACACAACAACAATTAATGAGTACTTGATTGCTTCAGATCTGCCAGATgtactactca ... gtcttcccagGTGGATATTACCTCA