Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTAGCTTATTCTAACTACCTAAGCCATGCCAATAAGGTCGTGCCATGTGGCGAGACTAGTGCCACCCCAGCTTTACTCAAACACCTTGCTAAACGCCAGgtaagaaacactactaccattgacatatcaccgttgattgagggcacagtttctagttttccacatctgacaaaattaacggctagattttgtcctttct...

Basic information

species Glycine max
transcript GLYMA08G04840.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G04840.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G23210.1 (Arabidopsis thaliana), 5'ss of exon 3
CCTAGCTTATTCTAACTACCTAAGCCATGCCAATAAGGTCGTGCCATGTGGCGAGACTAGTGCCACCCCAGCTTTACTCAAACACCTTGCTAAACGCCAGgtaagaaacactactaccattgacatatcaccgt-tgattgagggcacagtttctagttttccacatctgacaaaattaacggctagattttgtcctttct
 ||| | || ||||| ||||||||||| || |||||||| ||||||||||||||   ||  ||  | || ||| | |||   ||  | || || || |||||||  ||    || | ||||    | |    |  | || ||| |     ||  |     |     | ||      |  |||   | ||            
ACTAACATACTCTAATTACCTAAGCCACGCAAATAAGGTGGTGCCATGTGGCGAATTTACAGCTTCTCCTGCTCTTCTCCGTCAAGTCGCCAAGCGTCAGgtaactaaactaaccaacattcctctgttttagcataatagagag----attcattaacgtaagtgtttggtggcgt--acgttaacatag----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151405505|gb|EV275319.1|EV275319
EST:     GCGAGACTAGTGCCACCCCAGCTTTACTCAAACACCTTGCTAAACGCCAG                         GTGGATTACATTCTTGGGGACAATCCATTGGGAATGTCGTACATGGTTGGA
genomic: GCGAGACTAGTGCCACCCCAGCTTTACTCAAACACCTTGCTAAACGCCAGgtaagaaaca ... catttactagGTGGATTACATTCTTGGGGACAATCCATTGGGAATGTCGTACATGGTTGGA
EST: gi|192303569|gb|FG995947.1|FG995947
EST:     GCGAGACTAGTGCCACCCCAGCTTTACTCAAACACCTTGCTAAACGCCAG                         GTGGATTACATTCTTGGGGACAATCCATTGGGAATGTCGTACATGGTTGGA
genomic: GCGAGACTAGTGCCACCCCAGCTTTACTCAAACACCTTGCTAAACGCCAGgtaagaaaca ... catttactagGTGGATTACATTCTTGGGGACAATCCATTGGGAATGTCGTACATGGTTGGA
EST: gi|298195045|gb|HO043573.1|HO043573
EST:     GCGAGACTAGTGCCACCCCAGCTTTACTCAAACACCTTGCTAAACGCCAG                         GTGGATTACATTCTTGGGGACAATCCATTGGGAATGTCGTACATGGTTGGA
genomic: GCGAGACTAGTGCCACCCCAGCTTTACTCAAACACCTTGCTAAACGCCAGgtaagaaaca ... catttactagGTGGATTACATTCTTGGGGACAATCCATTGGGAATGTCGTACATGGTTGGA
EST: gi|51335328|gb|CO979194.1|CO979194
EST:     GCGAGACTAGTGCCACCCCAGCTTTACTCAAACACCTTGCTAAACGCCAG                         GTGGATTACATTCTTGGGGACAATCCATTGGGAATGTCGTACATGGTTGGA
genomic: GCGAGACTAGTGCCACCCCAGCTTTACTCAAACACCTTGCTAAACGCCAGgtaagaaaca ... catttactagGTGGATTACATTCTTGGGGACAATCCATTGGGAATGTCGTACATGGTTGGA
EST: gi|192303570|gb|FG995948.1|FG995948
EST:     GCGAGACTAGTGCCACCCCAGCTTTACTCAAACACCTTGCTAAACGCCAG                         GTGGATTACATTCTTGGGGACAATCCATTGGGAATGTCGTACATGGTTGGA
genomic: GCGAGACTAGTGCCACCCCAGCTTTACTCAAACACCTTGCTAAACGCCAGgtaagaaaca ... catttactagGTGGATTACATTCTTGGGGACAATCCATTGGGAATGTCGTACATGGTTGGA