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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACTCTGACATTCAATCCTTTATAAGATCAGTTCTAGATGGATATAATGTGTGTATATTTGCTTATGGCCAAACTGGTTCAGGGAAAACTTATACGATGgtatgaaccctctgaatatattgatttttatctcatacatcatgctattgaaggaattcttcattctataagatgccaacttttctcag

Basic information

species Glycine max
transcript GLYMA08G04580.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G04580.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os05g44560.1 (Oryza sativa), 5'ss of exon 14
ATACTCTGACATTCAATCCTTTATAAGATCAGTTCTAGATGGATATAATGTGTGTATATTTGCTTATGGCCAAACTGGTTCAGGGAAAACTTATACGATGgtatgaaccctc-tgaatatattg-------------atttttatctcatac--atcat-------gctattgaaggaattcttcattctataa-gatgccaacttttc-tcag-------------------------------
 | ||| ||||||||| |  | ||  |||||||||| |||||||  ||||| ||||| ||||||||||| |||||||||||||| |||||||| || ||||||  |||  |     |||| ||               || ||| || |||   ||| |       | ||||| |    |||  |||  |  |  | | | |||||||  |||                                
TTTCTCGGACATTCAACCGCTGATTCGATCAGTTCTTGATGGATTCAATGTTTGTATTTTTGCTTATGGTCAAACTGGTTCAGGAAAAACTTACACAATGgtactaacttttaccgatattttactggctcagcattgttgttaacttatattgatcttttttattggtattgtactggttcagcatgatgcactgctactaacttttgatcacttatgttctattccaataattttgttcttag

upper sequence: GLYMA08G04580.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os06g36080.1 (Oryza sativa), 5'ss of exon 12
ATACTCTGACATTCAATCCTTTATAAGATCAGTTCTAGATGGATATAATGTGTGTATATTTGCTTATGGCCAAACTGGTTCAGGGAAAACTTATACGATGgtatga-accctctgaata----tattgattt---ttatctcatacatca-tgctattgaaggaattcttcattctataagatgccaacttttctcag-------
|| |   || |||||| |  | || ||||||||||| ||||| |||||||| ||||| ||||| ||||| |||||||| ||||||||||| || || |||||||||  | ||| | |||    ||||||| |   |||| ||||  |  | | |||||||    |||  |  |||| |   ||||||  ||| |  |        
ATTCAAGGAAATTCAACCACTAATTAGATCAGTTCTTGATGGCTATAATGTTTGTATTTTTGCGTATGGTCAAACTGGATCAGGGAAAACATACACAATGgtatgatgctctcagcataagaatattgatctaatttatgtcattgagaagtactattgacattattaat-gttct-tgccatgccatttttacaaatatcttag

upper sequence: GLYMA08G04580.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os01g54080.1 (Oryza sativa), 5'ss of exon 14
ATACTCTGACATTCAATCCTTTATAAGATCAGTTCTAGATGGATATAATGTGTGTATATTTGCTTATGGCCAAACTGGTTCAGGGAAAACTTATACGATGgtatgaac--cctctgaatatatt---gatttttatctcatacatcatgctattgaaggaattcttcattctataagatgccaacttttctcag----
 | ||| || || ||| | || || ||||||||||| |||||||  ||||| || || ||||| ||||| |||||||||||||| ||||| || || |||||||  ||  |   | ||   |||   ||     | |     |  |   ||||    ||   | ||     |  |   |   | |||||  |      
TTTCTCCGATATCCAACCTTTGATTAGATCAGTTCTTGATGGATTCAATGTTTGCATTTTTGCATATGGACAAACTGGTTCAGGAAAAACATACACAATGgtatttactactgtttaactaattcaagacagcaaacctgctctgctaactatcattggggatattgtaaattgactctcttatcttttaccctttag

upper sequence: GLYMA08G04580.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G323622_T01 (Zea mays), 5'ss of exon 5
ATACTCTGACATTCAATCCTTTATAAGATCAGTTCTAGATGGATATAATGTGTGTATATTTGCTTATGGCCAAACTGGTTCAGGGAAAACTTATACGATGgtatgaaccct---ctgaatatattgatttttatctcatacatcatgctattgaaggaattcttcattctataagatgccaacttttctcag
|| |||||| || ||  |  | || ||||||||||| ||||| | ||||||||| || ||||| ||||| |||||||||||||| || ||||| || |||||| ||   |    || || |||   | ||  || | ||| ||  |  |   ||    | |  |   |   | | ||      |||||  ||
ATTCTCTGATATCCAGCCTCTGATCAGATCAGTTCTTGATGGGTTTAATGTGTGCATTTTTGCCTATGGTCAAACTGGTTCAGGAAAGACTTACACAATGgtaagacggcagagctcaaaatagaaagttgaat-tgata-atagtcgtggcgatattagtaattggtgcctgacattgttttttttcctag

upper sequence: GLYMA08G04580.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G062034_T01 (Zea mays), 5'ss of exon 5
ATACTCTGACATTCAATCCTTTATAAGATCAGTTCTAGATGGATATAATGTGTGTATATTTGCTTATGGCCAAACTGGTTCAGGGAAAACTTATACGATGgtatgaa-ccctctgaat----atattgatttttat---ctcatacatcatgctattgaaggaattcttcattctataagatgccaact--tttctcag
 | |   || ||||   |  | || ||||||||||| ||||| || ||||| || || ||||| ||||| |||||||| ||||| |||||  |||| |||||||||| |  || |||     |||||  |||  ||    | | |   | |     || ||||  | || |   ||     |  |||    || |||||
TTTCAACGATATTCGGCCACTAATTAGATCAGTTCTTGATGGCTACAATGTTTGCATTTTTGCATATGGTCAAACTGGATCAGGAAAAACACATACAATGgtatgaagctatcagaaccgaaatatttttttaaatatgtttagattcctttacgatggaggatatatttacaataacttgtttcaatgaattgctcag

upper sequence: GLYMA08G04580.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G124883_T01 (Zea mays), 5'ss of exon 5
ATACTCTGACATTCAATCCTTTATAAGATCAGTTCTAGATGGATATAATGTGTGTATATTTGCTTATGGCCAAACTGGTTCAGGGAAAACTTATACGATGgtatgaaccctctgaatatattgatttttatctcatacatcatgctattgaaggaattcttcattctataagatgccaacttttctcag
|| |||||| || ||| |  | || ||||||||||| ||||| | ||||||||| || ||||| ||||| |||||||| || || || ||||| || |||||| ||   |   |  |  | | |      |   ||  ||       |||    | | ||   |  |    ||       |||||| ||
ATTCTCTGATATCCAACCTCTGATCAGATCAGTTCTTGATGGGTTTAATGTGTGCATTTTTGCCTATGGTCAAACTGGATCCGGAAAGACTTACACAATGgtacgagggcagggcttgaaataacaaagttgaaattgatataagccttgggatattactaactgttgcttgacattgttttttcttag

upper sequence: GLYMA08G04580.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G18410.1 (Arabidopsis thaliana), 5'ss of exon 13
ATACTCTGACATTCAATCCTTTATAAGATCAGTTCTAGATGGATATAATGTGTGTATATTTGCTTATGGCCAAACTGGTTCAGGGAAAACTTATACGATGgtatgaaccctctga-atatattgattt--ttatctcatacatcatgctattgaaggaattcttcattctataagatgccaacttttctcag
||  || || ||  || |  ||||  |||||||||| || || || ||||| ||||| ||||| ||||| || || || |||||||||||||| || ||||||   |  | ||   ||||   ||||   |   |  | | || |||| | |  |       ||||| | || |         |||   |||
ATTTTCAGATATAAAACCTCTTATTCGATCAGTTCTTGACGGGTACAATGTATGTATCTTTGCATATGGTCAGACAGGATCAGGGAAAACTTACACAATGgtactcattcactagtatatcacgattaagtggccagacaaatgatgccactaca-------ttcataccattat-cattgtttttgtccag

upper sequence: GLYMA08G04580.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G73860.1 (Arabidopsis thaliana), 5'ss of exon 13
ATACTCTGACATTCAATCCTTTATAAGATCAGTTCTAGATGGATATAATGTGTGTATATTTGCTTATGGCCAAACTGGTTCAGGGAAAACTTATACGATGgtatgaaccctctgaatatattgattttta--tctcatacatcatgctattgaaggaattcttcattctataagatgccaacttttctcag
 |  || |||||   | |  |  | || ||||| || ||||| || ||||| ||||||||||| |||||||| || || ||||||||||||||||| |||||||| |  | |||    |  |||   | |  | |||||    ||     ||| |   || | | |||     | | ||   || | ||||
CTTTTCAGACATAAGACCGCTGGTTAGGTCAGTACTTGATGGGTACAATGTTTGTATATTTGCATATGGCCAGACAGGATCAGGGAAAACTTATACAATGgtatgtattcactgttgtttctgagagtaagatttcata-ggaataacgctgatgcgcttttaccttc-----gttccc--tttctttcag

upper sequence: GLYMA08G04580.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv17s0000g03700.t01 (Vitis vinifera), 5'ss of exon 13
ATACTCTGACATTCAATCCTTTATAAGATCAGTTCTAGATGGATATAATGTGTGTATATTTGCTTATGGCCAAACTGGTTCAGGGAAAACTTATACGATGgtatgaaccctctgaatatattgatttttatctcatacatcatgctattgaaggaattcttcattctataagatgccaacttttctcag-
 |  ||||||| |||| ||||  || |||| ||||| ||||| |||||||| ||||||||||||||||| ||||||||||| || || || || || |||||||||||  | |  || | ||  | |  ||  ||||  |  || ||||     |||      || | |||  |     |||| |||   
GTTTTCTGACACTCAACCCTTGGTACGATCTGTTCTTGATGGCTATAATGTATGTATATTTGCTTATGGTCAAACTGGTTCGGGCAAGACATACACAATGgtatgaact-tgtatatgttttagtctacatggcatatgtgttgatatttt--caataaaaacttgtgtaatgtattgtctttcctctag

upper sequence: GLYMA08G04580.1 (Glycine max), 5'ss of exon 6
lower sequence: PP1S34_101V6.1 (Physcomitrella patens), 5'ss of exon 14
ATACTCT-GACATTCAATCCTTTATAAGATCAGTTCTAGATGGATATAATGTGTGTATATTTGCTTATGGCCAAACTGGTTCAGGGAAAACTTATACGATGgtatgaaccctctgaatatattgatttttatct---catacatcatgcta--ttgaaggaattcttcattctataagatgccaacttttctcag------
 |  ||| ||||  ||  | || ||| | || ||  | ||||||| |||||| ||||| ||||||||||||||||| || || || || || ||||| ||||||    ||   | | |  |||   |||  |     || | | ||  |||  ||  | || | | |     |   | ||     |  | || |       
-TTTTCTAGACACACAGCCATTGATACGGTCTGTATTGGATGGATTTAATGTATGTATCTTTGCTTATGGCCAAACGGGGTCTGGAAAGACCTATACCATGgtaatgtccactttacttcattttatttagttcagccagatagcaatctaaattatatgattccctaccattgccatatttttgccatgcttaagttgtc