1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CTGACCTCTTAGGTATCATTGCAGGACATCTGTACTACTTCTTTACAGTGTTGCATCCACTAGCAGGTGGAAAGAACATTTTGAAGACTCCAATGTGGGTgtatccttctcgtttactgttctttaaggtgttaagcgtatactgttgtcattttaagtatttttattttgtactttcatgtagctttatttatttactt...
species | Glycine max |
transcript | GLYMA08G03630.1 |
intron # | 6 |
splice site | 5' |
intron type | U12 (go to U12 genes for details) |
EST: TTGCATCCACTAGCAGGTGGAAAGAACATTTTGAAGACTCCAATGTGGGT ACATAAATTAATTGCAAGATGGAGAATTGGAGTGCGACCAATTAGCCGTGGEST: gi|192332520|gb|FK025625.1|FK025625
genomic: TTGCATCCACTAGCAGGTGGAAAGAACATTTTGAAGACTCCAATGTGGGTgtatccttct ... tattttccagACATAAATTAATTGCAAGATGGAGAATTGGAGTGCAACCAATTAGCCGTGG
EST: TTGCATCCACTAGCAGGTGGAAAGAACATTTTGAAGACTCCAATGTGGGT ACATAAATTAATTGCAAGATGGAGAATTGGAGTGCAACCAATTAGCCGTGGEST: gi|193631653|gb|FK582336.1|FK582336
genomic: TTGCATCCACTAGCAGGTGGAAAGAACATTTTGAAGACTCCAATGTGGGTgtatccttct ... tattttccagACATAAATTAATTGCAAGATGGAGAATTGGAGTGCAACCAATTAGCCGTGG
EST: TCCACTAGCAGGTGGAAAGAACATTTTGAAGACTCCAATGTGGGT ACATAAATTAATTGCAAGATGGAGAATTGGAGTGCAACCAATTAGCCGTGGEST: gi|42723245|gb|CK769144.1|CK769144
genomic: TCCACTAGCAGGTGGAAAGAACATTTTGAAGACTCCAATGTGGGTgtatccttct ... tattttccagACATAAATTAATTGCAAGATGGAGAATTGGAGTGCAACCAATTAGCCGTGG
EST: TTGCATCCACTAGCAGGTGGAAAGAACATTTTGAAGACTCCAATGTGGGT ACATAAATTAATTGCAAGATGGEST: gi|192308726|gb|FG999765.1|FG999765
genomic: TTGCATCCACTAGCAGGTGGAAAGAACATTTTGAAGACTCCAATGTGGGTgtatccttct ... tattttccagACATAAATTAATTGCAAGATGG
EST: CAGGTGGAAAGAACATTTTGAAGACTCCAATGTGGGT ACATAAATTAATTGCAAGATGGAGAATTGGAGTGCAACCAATTAGCCGTGGEST: gi|14011622|gb|BG726544.1|BG726544
genomic: CAGGTGGAAAGAACATTTTGAAGACTCCAATGTGGGTgtatccttct ... tattttccagACATAAATTAATTGCAAGATGGAGAATTGGAGTGCAACCAATTAGCCGTGG
EST: GAAAGAACATTTTGAAGACTCCAATGTGGGT ACATAAATTAATTGCAAGATGGAGAATTGGAGTGCAACCAATTAGCCGTGGEST: gi|192308389|gb|FK001347.1|FK001347
genomic: GAAAGAACATTTTGAAGACTCCAATGTGGGTgtatccttct ... tattttccagACATAAATTAATTGCAAGATGGAGAATTGGAGTGCAACCAATTAGCCGTGG
EST: TTGCATCCACTAGCAGGTGGAAAGAACATTTTGAAGACTCCAATGTGGGT ACATAAATTAATTGCAAGATGGAGAATTGGAGTGCAACCAATTAGCCGTGGEST: gi|208084549|gb|GD879739.1|GD879739
genomic: TTGCATCCACTAGCAGGTGGAAAGAACATTTTGAAGACTCCAATGTGGGTgtatccttct ... tattttccagACATAAATTAATTGCAAGATGGAGAATTGGAGTGCAACCAATTAGCCGTGG
EST: ATTTTGAAGACTCCAATGTGGGT ACATAAATTAATTGCAAGATGGAGAATTGGAGTGCAACCAATTAGCCGTGGEST: gi|213596841|gb|DB978045.1|DB978045
genomic: ATTTTGAAGACTCCAATGTGGGTgtatccttct ... tattttccagACATAAATTAATTGCAAGATGGAGAATTGGAGTGCAACCAATTAGCCGTGG
EST: TTGCATCCACTAGCAGGTGGAAAGAACATTTTGAAGACTCCAATGTGGGT ACATAAATTAATTGCAAGATGGAGAATTGGAGTGCAACCAATTAGCCGTGG
genomic: TTGCATCCACTAGCAGGTGGAAAGAACATTTTGAAGACTCCAATGTGGGTgtatccttct ... tattttccagACATAAATTAATTGCAAGATGGAGAATTGGAGTGCAACCAATTAGCCGTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGACCTCTTAGGTATCATTGCAGGACATCTGTACTACTTCTTTACAGTGTTGCATCCACTAGCAGGTGGAAAGAACATTTTGAAGACTCCAATGTGGGTgtatccttctcgtttactgttctttaaggtgttaagcgtatactgttgtcattttaagtatttttattttgtactttcatgtagctttatttatttactt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA