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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGACATACATAAGCGTGGGGGAACTATCCTTGGTTCATCACGAGGTGGACATGATACCACTAAGATAGTTGACAGTATTCAAGATCGGGGAATTAATCAGgtctgcatttcattctatttattacaacatgtaacttcattttgtatgtataaaaatcagcagtctaataactcattcaattccaccag

Basic information

species Glycine max
transcript GLYMA08G03570.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G03570.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os05g44922.1 (Oryza sativa), 5'ss of exon 6
TGACATACATAAGCGTGGGGGAACTATCCTTGGTTCATCACGAGGTGGACATGATACCACTAAGATAGTTGACAGTATTCAAGATCGGGGAATTAATCAGgtc--tgcatttcattctatttattacaacatgtaacttcattttgtatgtataaaaatcagcagtctaataactcattcaattccaccag
|||||| || ||| | || || ||  | |||||  ||||||||||||| |||||||| |  ||||| |||||||  ||||| ||||| ||||||||||||||   |||  ||  ||  |  |||      || || ||   || ||  ||        |||       |    || ||  |  |   ||||
TGACATCCACAAGAGGGGTGGGACAGTTCTTGGCACATCACGAGGTGGCCATGATACAAAAAAGATTGTTGACAACATTCAGGATCGTGGAATTAATCAGgtaaatgcggttgtttgcacctat---gtgatatagctc--ttctgattg-------gtcattgtctcatgtgcttatgtacattacccag

upper sequence: GLYMA08G03570.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM5G879882_T03 (Zea mays), 5'ss of exon 6
TGACATACATAAGCGTGGGGGAACTATCCTTGGTTCATCACGAGGTGGACATGATACCACTAAGATAGTTGACAGTATTCAAGATCGGGGAATTAATCAGgtctgcatttcattctatttattacaacatgtaact-tcattttgtatgtataaaaatcagcagtctaataactcattcaattccaccag
||| || || || || || || ||  | |||||  ||||||||||||| ||||||||||  ||||| |||||||  ||||||||||| |||||||||||||| ||   ||  |  |   | || |      ||||  | |||||| | ||  |  ||       |||  || | |||  |          
TGATATCCACAAACGAGGTGGTACAGTTCTTGGAACATCACGAGGTGGCCATGATACCAAAAAGATTGTTGACAACATTCAAGATCGTGGAATTAATCAGgtatgtgcttgctgattagtgtttctttgcataacccttattttggaggttgagtaaatgttcttctt-taccacatctag---------

upper sequence: GLYMA08G03570.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM5G816636_T02 (Zea mays), 5'ss of exon 6
TGACATACATAAGCGTGGGGGAACTATCCTTGGTTCATCACGAGGTGGACATGATACCACTAAGATAGTTGACAGTATTCAAGATCGGGGAATTAATCAGgtctgcatttcattctatttattacaacatgtaacttcattttgtatgtataaaaatcagca--gtctaataactcattcaa-----ttccaccag---------------------------------------------------
|||||| || ||  | || |||||| | || || ||||| ||||| || ||||| |||   ||||||||||||||||| |||||||| || || ||||||||        ||   ||   |||| |   |  | |||  | |  | | | ||  | || |     | |  |  | |  | ||     ||  ||||                                                    
TGACATTCACAAAAGGGGTGGAACTGTTCTCGGATCATCTCGAGGAGGCCATGACACCGTGAAGATAGTTGACAGTATCCAAGATCGTGGCATAAATCAGgtaaatgaaacaaaataacaattatactcttaatctttttctcttttatgtatcactctgtcttatttcctggcactgtgaagactcttttaccaaggtttgacacttaaactttcacattggtttaactctgattatttgtttcag

upper sequence: GLYMA08G03570.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv11s0016g02850.t01 (Vitis vinifera), 5'ss of exon 6
TGACATACATAAGCGTGGGGGAACTATCCTTGGTTCATCACGAGGTGGACATGATACCACTAAGATAGTTGACAGTATTCAAGATCGGGGAATTAATCAGgtctgcatttcattctatttattacaacatgtaacttcattttgtatgtataaaaatcagcagtc-taataactcattcaattccaccag-------------------------------------
||| || ||||| ||||||||||| || |||||  ||||||||||||| ||||||||| | |||||||||||||||||||| ||||| ||||| ||||||||||| |    || |||||| ||     |  || ||   |      |    |    |  | | |    | | ||      |   |  ||                                      
TGATATTCATAAACGTGGGGGAACCATACTTGGGACATCACGAGGTGGCCATGATACCTCAAAGATAGTTGACAGTATTCAGGATCGTGGAATCAATCAGgtctgtagacaatactatttcttgtccaagttatctgagtcacactttcggagttttgtgtatttgctacacctgggcacacctcttcaatgcatggacgttagatttatagctttgttgatctcag