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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGATGACGAAGTTGATTCCCAGAAACACTGTTATCCCTACCAAGAAATCCCAGGTGTTTACCACCTACCAGGATCAGCAGAGTACCGTCTCCATTCAGgtatggctcattattcaactgcattaaagggcacgatgctcaattgtcttctaaattcaaaatgcatgactgtgtagtgtagtggactttaataattgatgccttttctcaatacatag

Basic information

species Glycine max
transcript GLYMA08G02960.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G02960.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os02g02410.1 (Oryza sativa), 5'ss of exon 6
GGTGATGACGAAGTTGATTCCCAGAAACACTGTTATCCCTACCAAGAAATCCCAGGTGTTTACCACCTACCAGGATCAGCAGAGTACCGTCTCCATTCAGgtatggctcattattcaactgcattaaagggcacgatgctcaattgtcttctaaattcaaaatgcatgactgtgtagtgtagtggactttaataattgatgccttttctcaatacatag
 || ||||| |||||||| ||||| ||||| || ||||| |||||||| ||||||||||| ||||||||||||||||||||||  ||||||||||| ||||||     ||| |   ||||   ||    |   |    |   |||   | ||      |||||    |           ||  |    | |||         ||   ||       |||
AGTCATGACCAAGTTGATCCCCAGGAACACCGTCATCCCCACCAAGAAGTCCCAGGTGTTCACCACCTACCAGGATCAGCAGACAACCGTCTCCATCCAGgtaacagacataagcaaactttcttctttgagtcctgac---attacatcctggtcagaaaatttcagctcagaccacctaacgcctctgaat---------ctcgccttgtggtgtag

upper sequence: GLYMA08G02960.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G114793_T01 (Zea mays), 5'ss of exon 6
GGTGATGACGAAGTTGATTCCCAGAAACACTGTTATCCCTACCAAGAAATCCCAGGTGTTTACCACCTACCAGGATCAGCAGAGTACCGTCTCCATTCAGgtatggctcattattcaactgc-attaaagggcacgatgctcaattgtcttctaaattcaaaatgcatgactgtgtagtgtagtggactttaataattgatgccttttctcaatacatag
 || ||||| |||||||| || || |||||||| ||||| |||||||| || |||||||| |||||||||||||| |||||||  || |||||||| ||||||  | | | |  ||  ||||      |   | | ||  |||  ||     |   |   ||   | ||  ||| | ||   ||   |  |||  |  |                     
AGTCATGACCAAGTTGATCCCGAGGAACACTGTCATCCCGACCAAGAAGTCGCAGGTGTTCACCACCTACCAGGACCAGCAGACCACTGTCTCCATCCAGgtaacggttactgctcctctgctgcctgaattctccattgtcagctgcgggattggtagtaatgacctgtttgttttgtcctgtaatccataaatacag---------------------

upper sequence: GLYMA08G02960.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G415007_T01 (Zea mays), 5'ss of exon 6
GGTGATGACGAAGTTGATTCCCAGAAACACTGTTATCCCTACCAAGAAATCCCAGGTGTTTACCACCTACCAGGATCAGCAGAGTACCGTCTCCATTCAGgtatggctcattattcaactgcattaaagggcacgatgctcaattgtcttctaaatt-caaaatgcatgactgtgtagtgtagtggactttaataattgatgccttttctcaatacatag
 || ||||| |||||||| || || |||||||| ||||| |||||||| || |||||||| |||||||||||||| |||||||  || |||||||| |||||| ||                    | | |||   |||||   | |  |||  |||   |  ||| ||  || |||||    ||  || |     |||     |  ||  || | | ||
AGTCATGACCAAGTTGATCCCGAGGAACACTGTCATCCCGACCAAGAAGTCGCAGGTGTTCACCACCTACCAGGACCAGCAGACCACTGTCTCCATCCAGgtaagg--------------------acgcgcatcctgctcctgtcttctctgcattgtcagctgcgtgcttg-gtagtaatatgacctgtttgttttgtcttgtgatccaaacatacag

upper sequence: GLYMA08G02960.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv02s0025g02140.t01 (Vitis vinifera), 5'ss of exon 6
GGTGATGACGAAGTTGATTCCCAGAAACACTGTTATCCCTACCAAGAAATCCCAGGTGTTTACCACCTACCAGGATCAGCAGAGTACCGTCTCCATTCAGgtatggctcattattcaactgcattaaagggcacgatgctcaattgtcttctaaattcaaaatgcatgactgtgtagtgtagtggactttaataattgatgccttttctcaatacatag
||||||||| ||||||||||| || |||||||||||||| ||||||||||| || || || || || ||||||||||||||||  |||||||||||||||||||  || | |    | ||  || ||     || | | ||  ||    |   ||||         | |||| |   | |     |  |||| |   |                     
GGTGATGACCAAGTTGATTCCTAGGAACACTGTTATCCCGACCAAGAAATCTCAAGTTTTCACTACTTACCAGGATCAGCAGACCACCGTCTCCATTCAGgtat--ctgaatgcaaacctcaatcaagttctacaa-gttctgtt----ttggaattgttgtaatctcactg-gggttctctcctatcttaacatcag---------------------

upper sequence: GLYMA08G02960.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv16s0098g01580.t01 (Vitis vinifera), 5'ss of exon 6
GGTGATGACGAAGTTGATTCCCAGAAACACTGTTATCCCTACCAAGAAATCCCAGGTGTTTACCACCTACCAGGATCAGCAGAGTACCGTCTCCATTCAGgtatggctcattattcaactgcattaaag---ggcacgatgctcaattgtcttctaaattcaaaatgcatga-ctgtgtagtgtagtggactttaataattgatgccttttctcaatacatag
||||||||| || ||||||||||||||||| |||||||| ||||||||||| || || || || ||||| |||||||||||||  || || ||||||||||||   ||  ||     | |  || | |    ||   | || |  |   |     ||   |||    |||   || | |  | |||   |  |   | ||      ||  |      | | ||
GGTGATGACCAAATTGATTCCCAGAAACACCGTTATCCCAACCAAGAAATCTCAAGTTTTCACTACCTATCAGGATCAGCAGACAACGGTGTCCATTCAGgtacaacttcttgaatga-taaatgagaccttggtttggtgttacac-ataggacaaggacaatcctcatagtctttatcatctagc--atctgtctgatctgaatctaatgctttcaaacag