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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGATTGGTCATGGTCTTGGGGCTGCTGGTGGTTTGGAAGCCATAGCAACTATCAAAGCCATAACAACTGGCTGGTTGCATCCAAGCATTAACCTAGATgtaacctcctgaaccagaaattcatcctatcctattaatcatatgttacattgtgtaacttttgttgattcccacaagatcttaatattaagtgtctaattttctcacttttccgcag

Basic information

species Glycine max
transcript GLYMA08G02850.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G02850.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv02s0025g01730.t01 (Vitis vinifera), 5'ss of exon 6
AATGATTGGTCATGGTCTTGGGGCTGCTGGTGGTTTGGAAGCCATAGCAACTATCAAAGCCATAACAACTGGCTGGTTGCATCCAAGCATTAACCTAGATgtaac-ctcctgaaccagaaattcatcctatcctat--------taatcatatgtta-cattgtgtaacttttgttgattcccacaagatcttaat--attaagtgtctaattttctcact-tttccgcag
||||||||| ||||| ||||||||||| ||||| ||||||||||||||||| || ||||| || || ||||| ||| | ||||||| |||||||| | |||||   | ||| |      | |||  | | |  |||        || |    || || ||||   |     |  |   |||| |     |  ||||  | |   |||  |  | | ||  | ||| |  ||
AATGATTGGACATGGGCTTGGGGCTGCCGGTGGATTGGAAGCCATAGCAACCATAAAAGCAATCACCACTGGATGGATACATCCAACCATTAACCAATATgtattgcacctcagttctcatttctccattttatatgctggatttagttgattgctagcatttctttttcctgatatcttcctatggttttctaatggacttcatgttgatgtatttctttcttttcatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6718887|gb|AW306534.1|AW306534
EST:     CTATCAAAGCCATAACAACTGGCTGGTTGCATCCAAGCATTAACCTAGAT                         AACTTGGAGGCTAGTGTTACAATTGACACTGTCCCTAACGTTAAGAAGAAG
genomic: CTATCAAAGCCATAACAACTGGCTGGTTGCATCCAAGCATTAACCTAGATgtaacctcct ... ttttccgcagAACTTGGAGGCTAGTGTTACAATTGACACTGTCCCTAACGTTAAGAAGAAG
EST: gi|58018638|gb|CX705380.1|CX705380
EST:     CTATCAAAGCCATAACAACTGGCTGGTTGCATCCAAGCATTAACCTAGAT                         AACTTGGAGGCTAGTGTTACAATTGACACTGTCCCTAACGTTAAGAAGAAG
genomic: CTATCAAAGCCATAACAACTGGCTGGTTGCATCCAAGCATTAACCTAGATgtaacctcct ... ttttccgcagAACTTGGAGGCTAGTGTTACAATTGACACTGTCCCTAACGTTAAGAAGAAG