Sequence
atgc intronic sequence ATGC exonic sequenceGTTCGTGATTACATTCATGTTCTTGATTTAGCAGATGGGCATATTGCTGCGTTGCGTAAACTGGATGATCCTAAAATAGgtatttattccaaatttattattttcttctaataatttactgtgttcttttggtaaactcttgacattagcaaatattgtgaatgtgaattgaatgatta...
Basic information
species | Glycine max |
transcript | GLYMA08G02690.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G02690.2 (Glycine max), 5'ss of exon 6
lower sequence: AT4G10960.1 (Arabidopsis thaliana), 5'ss of exon 6
GTTCGTGATTACATTCATGTTCTTGATTTAGCAGATGGGCATATTGCTGCGTTGCGTAAACTGGATGATCCTAAAATAGgtatttattccaaatttattattttcttctaataatttactgtgttcttttggtaaactcttgacattagcaa-atattgtgaatgtgaattgaatgatta
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GTTCGAGATTACATTCATGTTATTGATTTAGCTGATGGACACATAGCGGCTCTACGTAAGCTAGAAGATTGCAAGATCGgtatat-tatgatttccattcgtttctctta----tctactacaatcattctcaagtctcttaactttgtttgtgtgttgtttatattcag----------
upper sequence: GLYMA08G02690.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv02s0025g01580.t01 (Vitis vinifera), 5'ss of exon 6
GTTCGTGATTACATTCATGTTCTTGATTTAGCAGATGGGCATATTGCTGCGTTGCGTAAACTGGATGATCCTAAAATAGgtatttattccaaatttattattttcttctaataatttactgtgttcttttggtaaactcttgacattagcaaatattgtgaatgtgaattgaatgatta-
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GTCCGTGATTACATCCATGTTGTTGATTTGGCAGATGGGCACATTGCAGCTTTGTGCAAGCTATTCAACTCAGAAATAGgtcagtattctgaaattgttctttgtccatgattggtttc-atgtgaaaatatcaaatttgcttctttgatttgcttccaatttgctaaatggttgcatat
upper sequence: GLYMA08G02690.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv02s0025g01560.t01 (Vitis vinifera), 5'ss of exon 6
GTTCGTGATTACATTCATGTTCTTGATTTAGCAGATGGGCATATTGCTGCGTTGCGTAAACTGGATGATCCTAAAATAGgtatttattccaaatttattattttcttctaataatttactgtgttctt-ttggtaaactcttgacattagcaaatattgtgaatgtgaattgaatgatta-
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GTACGGGATTACATTCATGTTGTGGATTTAGCAGATGGGCACATTGCAGCCTTGCACAAGCTACTCAACTCAGAAATAGgttagtgttttgaaattgtcctttgtttatgatccgt--ctgctttcaaattgctaaatgactggatatattagttatactatcccaaaaatgaccaagtgtMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19346469|gb|BM891349.1|BM891349EST: GCGTTGCGTAAACTGGATGATCCTAAAATAG GTTGTGAGGTTTATAACTTGGGAACAGGAAAGGGAACATCAGTTTTGGAGA
genomic: GCGTTGCGTAAACTGGATGATCCTAAAATAGgtatttattc ... gcatatgcagGTTGTGAGGTTTATAACTTGGGAACAGGAAAGGGAACATCAGTTTTGGAGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTCGTGATTACATTCATGTTCTTGATTTAGCAGATGGGCATATTGCTGCGTTGCGTAAACTGGATGATCCTAAAATAGgtatttattccaaatttattattttcttctaataatttactgtgttcttttggtaaactcttgacattagcaaatattgtgaatgtgaattgaatgatta
- - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - TGCTGC